Sample 3300025970

Overview

Basic Information
IMG/M Taxon OID	3300025970 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101403 \| Ga0210081
Sample Name	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqA_D1 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	119736411
Sequencing Scaffolds	27
Novel Protein Genes	29
Associated Families	29

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	3
All Organisms → cellular organisms → Archaea	1
Not Available	6
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	2
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → FCB group	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium soli	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium IS3	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.131752	Long. (^o)	-122.266335	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002477	Metagenome / Metatranscriptome	555	Y
F008627	Metagenome / Metatranscriptome	330	Y
F015245	Metagenome / Metatranscriptome	256	Y
F020261	Metagenome / Metatranscriptome	225	Y
F020359	Metagenome / Metatranscriptome	224	Y
F025254	Metagenome / Metatranscriptome	202	Y
F047211	Metagenome	150	Y
F048676	Metagenome / Metatranscriptome	148	Y
F052687	Metagenome	142	Y
F055469	Metagenome / Metatranscriptome	138	Y
F058158	Metagenome / Metatranscriptome	135	Y
F060099	Metagenome	133	Y
F061999	Metagenome / Metatranscriptome	131	Y
F062887	Metagenome / Metatranscriptome	130	Y
F074891	Metagenome / Metatranscriptome	119	Y
F076224	Metagenome	118	Y
F077315	Metagenome / Metatranscriptome	117	Y
F077325	Metagenome	117	Y
F078289	Metagenome / Metatranscriptome	116	N
F080179	Metagenome	115	Y
F082716	Metagenome	113	Y
F084254	Metagenome / Metatranscriptome	112	Y
F090405	Metagenome / Metatranscriptome	108	Y
F093897	Metagenome	106	Y
F103291	Metagenome	101	Y
F103506	Metagenome / Metatranscriptome	101	Y
F105200	Metagenome / Metatranscriptome	100	Y
F105202	Metagenome	100	Y
F105217	Metagenome	100	Y

Family

Category

Number of Sequences

3D Structure?

F002477

Metagenome / Metatranscriptome

555

F008627

Metagenome / Metatranscriptome

330

F015245

Metagenome / Metatranscriptome

256

F020261

Metagenome / Metatranscriptome

225

F020359

Metagenome / Metatranscriptome

224

F025254

Metagenome / Metatranscriptome

202

F047211

Metagenome

150

F048676

Metagenome / Metatranscriptome

148

F052687

Metagenome

142

F055469

Metagenome / Metatranscriptome

138

F058158

Metagenome / Metatranscriptome

135

F060099

Metagenome

133

F061999

Metagenome / Metatranscriptome

131

F062887

Metagenome / Metatranscriptome

130

F074891

Metagenome / Metatranscriptome

119

F076224

Metagenome

118

F077315

Metagenome / Metatranscriptome

117

F077325

Metagenome

117

F078289

Metagenome / Metatranscriptome

116

F080179

Metagenome

115

F082716

Metagenome

113

F084254

Metagenome / Metatranscriptome

112

F090405

Metagenome / Metatranscriptome

108

F093897

Metagenome

106

F103291

Metagenome

101

F103506

Metagenome / Metatranscriptome

101

F105200

Metagenome / Metatranscriptome

100

F105202

Metagenome

100

F105217

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210081_1000036	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	31964	Open in IMG/M
Ga0210081_1000059	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	25049	Open in IMG/M
Ga0210081_1000066	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	24209	Open in IMG/M
Ga0210081_1000146	All Organisms → cellular organisms → Archaea	11644	Open in IMG/M
Ga0210081_1000801	Not Available	3683	Open in IMG/M
Ga0210081_1001181	All Organisms → cellular organisms → Bacteria → Proteobacteria	3093	Open in IMG/M
Ga0210081_1006553	Not Available	1542	Open in IMG/M
Ga0210081_1010453	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1263	Open in IMG/M
Ga0210081_1012533	All Organisms → cellular organisms → Bacteria	1166	Open in IMG/M
Ga0210081_1013932	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
Ga0210081_1017038	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1011	Open in IMG/M
Ga0210081_1018505	All Organisms → cellular organisms → Bacteria → FCB group	972	Open in IMG/M
Ga0210081_1020435	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales	927	Open in IMG/M
Ga0210081_1021821	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
Ga0210081_1023061	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	875	Open in IMG/M
Ga0210081_1024298	Not Available	855	Open in IMG/M
Ga0210081_1026060	All Organisms → cellular organisms → Bacteria → Proteobacteria	827	Open in IMG/M
Ga0210081_1030101	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
Ga0210081_1036011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium soli	709	Open in IMG/M
Ga0210081_1049750	Not Available	609	Open in IMG/M
Ga0210081_1056962	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	571	Open in IMG/M
Ga0210081_1057899	Not Available	567	Open in IMG/M
Ga0210081_1058001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	566	Open in IMG/M
Ga0210081_1059766	Not Available	558	Open in IMG/M
Ga0210081_1068413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	522	Open in IMG/M
Ga0210081_1071354	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium IS3	512	Open in IMG/M
Ga0210081_1074166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	501	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0210081_1000036

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus

31964

Open in IMG/M

Ga0210081_1000059

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus

25049

Open in IMG/M

Ga0210081_1000066

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus

24209

Open in IMG/M

Ga0210081_1000146

All Organisms → cellular organisms → Archaea

11644

Open in IMG/M

Ga0210081_1000801

Not Available

3683

Open in IMG/M

Ga0210081_1001181

All Organisms → cellular organisms → Bacteria → Proteobacteria

3093

Open in IMG/M

Ga0210081_1006553

Not Available

1542

Open in IMG/M

Ga0210081_1010453

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium

1263

Open in IMG/M

Ga0210081_1012533

All Organisms → cellular organisms → Bacteria

1166

Open in IMG/M

Ga0210081_1013932

All Organisms → cellular organisms → Bacteria

1108

Open in IMG/M

Ga0210081_1017038

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium

1011

Open in IMG/M

Ga0210081_1018505

All Organisms → cellular organisms → Bacteria → FCB group

972

Open in IMG/M

Ga0210081_1020435

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales

927

Open in IMG/M

Ga0210081_1021821

All Organisms → cellular organisms → Bacteria

899

Open in IMG/M

Ga0210081_1023061

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

875

Open in IMG/M

Ga0210081_1024298

Not Available

855

Open in IMG/M

Ga0210081_1026060

All Organisms → cellular organisms → Bacteria → Proteobacteria

827

Open in IMG/M

Ga0210081_1030101

All Organisms → cellular organisms → Bacteria

774

Open in IMG/M

Ga0210081_1036011

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium soli

709

Open in IMG/M

Ga0210081_1049750

Not Available

609

Open in IMG/M

Ga0210081_1056962

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

571

Open in IMG/M

Ga0210081_1057899

Not Available

567

Open in IMG/M

Ga0210081_1058001

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium

566

Open in IMG/M

Ga0210081_1059766

Not Available

558

Open in IMG/M

Ga0210081_1068413

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

522

Open in IMG/M

Ga0210081_1071354

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium IS3

512

Open in IMG/M

Ga0210081_1074166

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

501

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0210081_1000036	Ga0210081_10000367	F105217	MKMASNVNSNNERNSLIDSIQYRLFYAEINLDKIPTFIPLDIFPKDKIASEVAIDGFLFYANSALDLVFVEINKKLELGLPPNQINPENIMLNFNSKKSNDSKMMLEEFQKYFQKPTHEEKIISDKEFNDGLNRYGFDVIGFHAEYEARGQEKYQHFWNRASSRLWEIRNQQDLESYDSLLKNAGKRGKDEPRNYLRVKLADDNRPSVYWDSAHYENPKRYFTNVLSLVKQFIDRILEILKPLYPSDSSLVV
Ga0210081_1000059	Ga0210081_100005923	F093897	MKPGFYISMGIAIAGLIVGFVLLNDIQQEKESKNIWIQKIPIQCNDVWEREHQEFYDLNPELLNSNKEKSKEILETIIKNHYEKAGISILDLNLELDVIDEIRCESCDCLGSDRVSIKIPKNQFELISQSEGWKPLE
Ga0210081_1000066	Ga0210081_100006613	F077325	MSDKGNWTEKDEVAIHAIIVNMLNQKQMFQDLGKTTILPNSFNIKNSNEYILGLFTGIVINLFANYWVGEHESGLSPEDLSYLYYKISLFREEIVSGLFD
Ga0210081_1000146	Ga0210081_100014612	F082716	MISKKDIRLMPFTFIIAPILLISLTFVVVTAYYDVIEEKEFIAGLSCPELMIYTDKQTIESKLYFGNENYLIYAEERLHNMC
Ga0210081_1000801	Ga0210081_10008013	F103291	MEMFGLSPVFATILIVSMGVILQNFLGWLKSKEDYDIKNALASTIIAFIVGITIIGPQIEAIQDQMLSELSELTIFASLIASIAGFDVLTKNVFKIANSKIHLQNKPI
Ga0210081_1001181	Ga0210081_10011812	F055469	MLKRTVVILAAAAFFWGTVPTQTAQARDDIWDLMNPSWWADKMFDNDDDWRHYRHYAYNPYWGGPYAQRPRVIVIQPPETEAQNPDTRPPE
Ga0210081_1006553	Ga0210081_10065533	F062887	MPVKQCSGGHKFGNKGKCYKGKGSKAKAARQGRAIKASQAKRGK
Ga0210081_1010453	Ga0210081_10104531	F025254	MEESVREMVFLIVEQLKAYVDGDEDALLELTQVLDSGRHDADVVNQAFELIFRALEPYAREDFSEDPTTPRRSVRVPTGSERALLDAPGYQYLYGLIEQGRISPEQFEEIMSRVREDTSFLDTEASARELATTV
Ga0210081_1012436	Ga0210081_10124363	F105200	MKPVQGRHRRRNVPDSFERKLGQLLEYSDAPHAEAFTMNVMRSVRREQRRRKIILWSFGLVGALFGLSGALMLTGPVSELLTFSLEMPVMKTMQVTLFVVGATA
Ga0210081_1012533	Ga0210081_10125331	F060099	MGLTDDQRDDAAKALRAAQEAIEYTVKGVKGLEEAATLRGRIDEIELYLKRAKMALKFI
Ga0210081_1013932	Ga0210081_10139321	F020359	MAARQSRRHKTPDEFWSKVLAAPKVKRILERRGVSPDDFQRDYEADNSRGARTPKRPTRGQIDAVEAFQKSGDFEAFKRALSTNSSAVANSALRRVVQFKAMGGSKTIRRRGGAENA
Ga0210081_1017038	Ga0210081_10170382	F080179	MAVAAKSVTSTRPVDIRVRFEPGLGMALYASVAPGEVGSVTVARNLGRGRAMLRYRGFTLMTQGAPDWRDGESFSVVVKEVGPPLLLASTNRTAKDDQRVTTVDSAVVPGGGESAEAGR
Ga0210081_1018505	Ga0210081_10185052	F076224	IFVTPDSIFEDSFVFDPVLMEKRIEWTEKKIKANEEKIKEVTFKVEFDSAFRYYSEEMKGHPFTVAFDSNICRVDVPNFKAYRTELPEIAAIDPLIELATNNIHFYAYKIPKIEKSNSEIKIEYYNDDSVYSYVVDYNVINIDSIVQANAGGRDLITLDKFKPVQPNDDTMLIKYQFDRDYYKRFYSDEEFKKQMEELQKELQELSKDVNNQKIRVHTEVTKTPKK
Ga0210081_1020435	Ga0210081_10204351	F052687	YGLKTQYDKGTIFAKMLETVIRKSIETMVKFLTIVLLLTALGGGTYYLLSMETVEDVKVMGKLQISEQYGSYVMASQSKDANYYAVVEGKVKNNMKKPIKNVFIKYVIAGKETSATIFDLAPGQELHFNTSGVATTGSSPEYDFVGIYYD
Ga0210081_1021821	Ga0210081_10218212	F008627	MMCRFLNADFELALRCPVDKCNHNVRFQAYPQLRDHALEVIACDAAGDADRLTCGKNCRALIESGHYWQSIYPESAIYSRNL
Ga0210081_1023061	Ga0210081_10230612	F090405	MKAALAFVFAIGLLVPGIAASDPSDCGRLMYQINHFEGMADRAEALGRDDWAEKTQRHVDVLETRLANRCPAFSARDEQQEAARQMALLLKMAATAAAKFFTMGMY
Ga0210081_1024298	Ga0210081_10242981	F058158	MGVTKKDRENRIDKRIINQKSYMSEFTKTEKDDIDIWELHVKEREYILAQIANDRRTSRIRNWIELIFMLGFIYYMLYDIYKDKDLDTIIKFLKA
Ga0210081_1026060	Ga0210081_10260602	F077315	MMICRASTLFLSRLAYYQLWTLLLLGLLVPAQAAEALNPDALPQAQATLERLEEQLATARTANAQELKTLRKEVAMVRSTAQDCLQQAEPKIEILDSELAILQPAKPKDTQKKTAQETQPAEQAEAPVSPAIAGQLQELLSSKASLEGRIAICKLLLLKSNYLDSNVDDYLRTVQTRQLLARGPTLVSV
Ga0210081_1030101	Ga0210081_10301012	F020261	MVVQEDLAVESFMVSSFGAFVMSLCQGLFSLRSEQTLAFLACGWALASGERQTITTYLWLSGATRVKHFSRFYVFLGGALYQARWQLWGRVIQQAAQWVPAEAVIVLEVDDSTKKK
Ga0210081_1036011	Ga0210081_10360112	F061999	HFNRGILRGLEPKKIDVQMLHRNPPRLGEMLGEDDWFDKLGPKGRDYTRAAYMARLHAFTEQCRQRILRGGPPRPTR
Ga0210081_1040304	Ga0210081_10403042	F103506	MGTYMINTESMLETDHFIILDESNTVRGNEFDRSYPKVQIVYPSSMNSYPDNKVTESRPENGSNYKEKEKHPFTITLNVDAD
Ga0210081_1049750	Ga0210081_10497501	F084254	EVIRQSKRHPRADQVASALAIRGLPIAEKDVMTVFDQYDIEKKIADSH
Ga0210081_1056962	Ga0210081_10569622	F015245	EVPESNRLIEIMFGYHPKASAAHGIADPMHWELISKMPWAGLGTPRKHPKFRHMDGSVFNGQLYIDDRLVVDKHGMLDRSLLHHPEVLEVAAEFGDPYQVLAPVSHEAHGSNTAW
Ga0210081_1057899	Ga0210081_10578991	F078289	SIFILIIVVFPLYGFNSLVRHEDIPKMRELGISQEVIQYIISNQTSSVSSEDVIKMKQSGLNNNDIMSAIKSDLYRPEQKSTSMKEVELIAKLKESGMSDEAVLQFIQTVKSTRRVDSDGNVTKQYTNESQRTQYPTTGATFPKLDNYGYDPSNGRFLFFIKPQNQE
Ga0210081_1058001	Ga0210081_10580011	F002477	IMAEPATGFLFAALVPAGNPSDVSYVVPLLDKVQGAIQRVTTTPKRQVHSVAGDLGINDATLRHTLHARGILTVGIPQTVEPLDPTPSPEASRAILTAASLTGKRTVHQVQGACTAGYSRPVVESYIASLLARGAGQLRYKGLAGAGVQLGMTVLAQNGATLVRIREQRLTKRAQKFRRFLRLPRPKP
Ga0210081_1059766	Ga0210081_10597661	F105202	PSISALKPEEYSGEIDKYNKIIQSDLHLDIQQRAHLYLASLYFSPMNPKRDYGLALEHLETYALFDPDFANAVDPRLLLAAIIEIERFSALAEAQTKEIQALSQELDILKRQSAAFRGSRQDIQSANLKLQKRIGQLQKKVRNLETSNAKLNKTIEMLSTLDSRLKEKRINFIKTDSIEE
Ga0210081_1068413	Ga0210081_10684131	F074891	MSAVTHDVVLKRKPRKKRNKGEAALRSLRRALARRKLELMREDEILHEQIYDVFEEEAGKKA
Ga0210081_1071354	Ga0210081_10713541	F048676	RLCGTASDAVGAVKLEIPKGFRLLKFKMSECLKNIIKLTISKI
Ga0210081_1074166	Ga0210081_10741661	F047211	EKETIDYAYEQMRQRATVDLVAPEAAIENLIKMVSYVDKRATTIDRSKLTDYSLLKELAQTGQLPAKR

Scaffold ID

Protein ID

Family

Sequence

Ga0210081_1000036

Ga0210081_10000367

F105217

MKMASNVNSNNERNSLIDSIQYRLFYAEINLDKIPTFIPLDIFPKDKIASEVAIDGFLFYANSALDLVFVEINKKLELGLPPNQINPENIMLNFNSKKSNDSKMMLEEFQKYFQKPTHEEKIISDKEFNDGLNRYGFDVIGFHAEYEARGQEKYQHFWNRASSRLWEIRNQQDLESYDSLLKNAGKRGKDEPRNYLRVKLADDNRPSVYWDSAHYENPKRYFTNVLSLVKQFIDRILEILKPLYPSDSSLVV

Ga0210081_1000059

Ga0210081_100005923

F093897

MKPGFYISMGIAIAGLIVGFVLLNDIQQEKESKNIWIQKIPIQCNDVWEREHQEFYDLNPELLNSNKEKSKEILETIIKNHYEKAGISILDLNLELDVIDEIRCESCDCLGSDRVSIKIPKNQFELISQSEGWKPLE

Ga0210081_1000066

Ga0210081_100006613

F077325

MSDKGNWTEKDEVAIHAIIVNMLNQKQMFQDLGKTTILPNSFNIKNSNEYILGLFTGIVINLFANYWVGEHESGLSPEDLSYLYYKISLFREEIVSGLFD

Ga0210081_1000146

Ga0210081_100014612

F082716

MISKKDIRLMPFTFIIAPILLISLTFVVVTAYYDVIEEKEFIAGLSCPELMIYTDKQTIESKLYFGNENYLIYAEERLHNMC

Ga0210081_1000801

Ga0210081_10008013

F103291

MEMFGLSPVFATILIVSMGVILQNFLGWLKSKEDYDIKNALASTIIAFIVGITIIGPQIEAIQDQMLSELSELTIFASLIASIAGFDVLTKNVFKIANSKIHLQNKPI

Ga0210081_1001181

Ga0210081_10011812

F055469

MLKRTVVILAAAAFFWGTVPTQTAQARDDIWDLMNPSWWADKMFDNDDDWRHYRHYAYNPYWGGPYAQRPRVIVIQPPETEAQNPDTRPPE

Ga0210081_1006553

Ga0210081_10065533

F062887

MPVKQCSGGHKFGNKGKCYKGKGSKAKAARQGRAIKASQAKRGK

Ga0210081_1010453

Ga0210081_10104531

F025254

MEESVREMVFLIVEQLKAYVDGDEDALLELTQVLDSGRHDADVVNQAFELIFRALEPYAREDFSEDPTTPRRSVRVPTGSERALLDAPGYQYLYGLIEQGRISPEQFEEIMSRVREDTSFLDTEASARELATTV

Ga0210081_1012436

Ga0210081_10124363

F105200

MKPVQGRHRRRNVPDSFERKLGQLLEYSDAPHAEAFTMNVMRSVRREQRRRKIILWSFGLVGALFGLSGALMLTGPVSELLTFSLEMPVMKTMQVTLFVVGATA

Ga0210081_1012533

Ga0210081_10125331

F060099

MGLTDDQRDDAAKALRAAQEAIEYTVKGVKGLEEAATLRGRIDEIELYLKRAKMALKFI

Ga0210081_1013932

Ga0210081_10139321

F020359

MAARQSRRHKTPDEFWSKVLAAPKVKRILERRGVSPDDFQRDYEADNSRGARTPKRPTRGQIDAVEAFQKSGDFEAFKRALSTNSSAVANSALRRVVQFKAMGGSKTIRRRGGAENA

Ga0210081_1017038

Ga0210081_10170382

F080179

MAVAAKSVTSTRPVDIRVRFEPGLGMALYASVAPGEVGSVTVARNLGRGRAMLRYRGFTLMTQGAPDWRDGESFSVVVKEVGPPLLLASTNRTAKDDQRVTTVDSAVVPGGGESAEAGR

Ga0210081_1018505

Ga0210081_10185052

F076224

IFVTPDSIFEDSFVFDPVLMEKRIEWTEKKIKANEEKIKEVTFKVEFDSAFRYYSEEMKGHPFTVAFDSNICRVDVPNFKAYRTELPEIAAIDPLIELATNNIHFYAYKIPKIEKSNSEIKIEYYNDDSVYSYVVDYNVINIDSIVQANAGGRDLITLDKFKPVQPNDDTMLIKYQFDRDYYKRFYSDEEFKKQMEELQKELQELSKDVNNQKIRVHTEVTKTPKK

Ga0210081_1020435

Ga0210081_10204351

F052687

YGLKTQYDKGTIFAKMLETVIRKSIETMVKFLTIVLLLTALGGGTYYLLSMETVEDVKVMGKLQISEQYGSYVMASQSKDANYYAVVEGKVKNNMKKPIKNVFIKYVIAGKETSATIFDLAPGQELHFNTSGVATTGSSPEYDFVGIYYD

Ga0210081_1021821

Ga0210081_10218212

F008627

MMCRFLNADFELALRCPVDKCNHNVRFQAYPQLRDHALEVIACDAAGDADRLTCGKNCRALIESGHYWQSIYPESAIYSRNL

Ga0210081_1023061

Ga0210081_10230612

F090405

MKAALAFVFAIGLLVPGIAASDPSDCGRLMYQINHFEGMADRAEALGRDDWAEKTQRHVDVLETRLANRCPAFSARDEQQEAARQMALLLKMAATAAAKFFTMGMY

Ga0210081_1024298

Ga0210081_10242981

F058158

MGVTKKDRENRIDKRIINQKSYMSEFTKTEKDDIDIWELHVKEREYILAQIANDRRTSRIRNWIELIFMLGFIYYMLYDIYKDKDLDTIIKFLKA

Ga0210081_1026060

Ga0210081_10260602

F077315

MMICRASTLFLSRLAYYQLWTLLLLGLLVPAQAAEALNPDALPQAQATLERLEEQLATARTANAQELKTLRKEVAMVRSTAQDCLQQAEPKIEILDSELAILQPAKPKDTQKKTAQETQPAEQAEAPVSPAIAGQLQELLSSKASLEGRIAICKLLLLKSNYLDSNVDDYLRTVQTRQLLARGPTLVSV

Ga0210081_1030101

Ga0210081_10301012

F020261

MVVQEDLAVESFMVSSFGAFVMSLCQGLFSLRSEQTLAFLACGWALASGERQTITTYLWLSGATRVKHFSRFYVFLGGALYQARWQLWGRVIQQAAQWVPAEAVIVLEVDDSTKKK

Ga0210081_1036011

Ga0210081_10360112

F061999

HFNRGILRGLEPKKIDVQMLHRNPPRLGEMLGEDDWFDKLGPKGRDYTRAAYMARLHAFTEQCRQRILRGGPPRPTR

Ga0210081_1040304

Ga0210081_10403042

F103506

MGTYMINTESMLETDHFIILDESNTVRGNEFDRSYPKVQIVYPSSMNSYPDNKVTESRPENGSNYKEKEKHPFTITLNVDAD

Ga0210081_1049750

Ga0210081_10497501

F084254

EVIRQSKRHPRADQVASALAIRGLPIAEKDVMTVFDQYDIEKKIADSH

Ga0210081_1056962

Ga0210081_10569622

F015245

EVPESNRLIEIMFGYHPKASAAHGIADPMHWELISKMPWAGLGTPRKHPKFRHMDGSVFNGQLYIDDRLVVDKHGMLDRSLLHHPEVLEVAAEFGDPYQVLAPVSHEAHGSNTAW

Ga0210081_1057899

Ga0210081_10578991

F078289

SIFILIIVVFPLYGFNSLVRHEDIPKMRELGISQEVIQYIISNQTSSVSSEDVIKMKQSGLNNNDIMSAIKSDLYRPEQKSTSMKEVELIAKLKESGMSDEAVLQFIQTVKSTRRVDSDGNVTKQYTNESQRTQYPTTGATFPKLDNYGYDPSNGRFLFFIKPQNQE

Ga0210081_1058001

Ga0210081_10580011

F002477

IMAEPATGFLFAALVPAGNPSDVSYVVPLLDKVQGAIQRVTTTPKRQVHSVAGDLGINDATLRHTLHARGILTVGIPQTVEPLDPTPSPEASRAILTAASLTGKRTVHQVQGACTAGYSRPVVESYIASLLARGAGQLRYKGLAGAGVQLGMTVLAQNGATLVRIREQRLTKRAQKFRRFLRLPRPKP

Ga0210081_1059766

Ga0210081_10597661

F105202

PSISALKPEEYSGEIDKYNKIIQSDLHLDIQQRAHLYLASLYFSPMNPKRDYGLALEHLETYALFDPDFANAVDPRLLLAAIIEIERFSALAEAQTKEIQALSQELDILKRQSAAFRGSRQDIQSANLKLQKRIGQLQKKVRNLETSNAKLNKTIEMLSTLDSRLKEKRINFIKTDSIEE

Ga0210081_1068413

Ga0210081_10684131

F074891

MSAVTHDVVLKRKPRKKRNKGEAALRSLRRALARRKLELMREDEILHEQIYDVFEEEAGKKA

Ga0210081_1071354

Ga0210081_10713541

F048676

RLCGTASDAVGAVKLEIPKGFRLLKFKMSECLKNIIKLTISKI

Ga0210081_1074166

Ga0210081_10741661

F047211

EKETIDYAYEQMRQRATVDLVAPEAAIENLIKMVSYVDKRATTIDRSKLTDYSLLKELAQTGQLPAKR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025970: Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqA_D1 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences