3300010317: Hot spring sediment microbial communities from Zodletone spring, Oklahoma to study Microbial Dark Matter (Phase II) - Zodletone Spring source 2m metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300010317
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0138766 | Ga0116197
• Sample Name: Hot spring sediment microbial communities from Zodletone spring, Oklahoma to study Microbial Dark Matter (Phase II) - Zodletone Spring source 2m metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 405129816
• Sequencing Scaffolds: 20
• Novel Protein Genes: 20
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Archaea → TACK group	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Oklahoma, Zodletone Spring
• Coordinates
  • Lat. (^o): 34.9956
  • Long. (^o): -98.6889
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004454	Metagenome / Metatranscriptome	437	Y
F018530	Metagenome / Metatranscriptome	234	Y
F024682	Metagenome / Metatranscriptome	205	Y
F028081	Metagenome / Metatranscriptome	192	Y
F030484	Metagenome / Metatranscriptome	185	Y
F036302	Metagenome	170	Y
F038920	Metagenome / Metatranscriptome	165	Y
F043801	Metagenome / Metatranscriptome	155	Y
F055829	Metagenome / Metatranscriptome	138	Y
F058721	Metagenome / Metatranscriptome	134	Y
F060099	Metagenome	133	Y
F062884	Metagenome / Metatranscriptome	130	Y
F070129	Metagenome	123	N
F073077	Metagenome	120	Y
F074887	Metagenome	119	Y
F082709	Metagenome / Metatranscriptome	113	Y
F105450	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0116197_1003893	Not Available	3078
Ga0116197_1011708	Not Available	1874
Ga0116197_1029561	Not Available	1233
Ga0116197_1032455	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1181
Ga0116197_1034049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1155
Ga0116197_1037334	All Organisms → cellular organisms → Archaea	1108
Ga0116197_1052814	All Organisms → cellular organisms → Archaea → TACK group	943
Ga0116197_1068514	All Organisms → cellular organisms → Archaea	838
Ga0116197_1075647	Not Available	802
Ga0116197_1077230	Not Available	795
Ga0116197_1081744	Not Available	774
Ga0116197_1084041	Not Available	765
Ga0116197_1090390	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	740
Ga0116197_1098339	Not Available	713
Ga0116197_1098508	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	712
Ga0116197_1099847	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	708
Ga0116197_1118859	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	655
Ga0116197_1121557	Not Available	649
Ga0116197_1125879	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	639
Ga0116197_1160840	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	574

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116197_1003893	Ga0116197_10038934	F074887	MHYEVVWPSGDLLGIFPSYPAALARARVWWDRGYACRIRKCMASLAPSALTMAAAVHQLRRGDR*
Ga0116197_1011708	Ga0116197_10117086	F030484	IDEAISKMSQIKKAAGDFKENVAGLVKDANIESTDWRFNVESHKEGVTIDIAIKLLITKKEQDLETSN*
Ga0116197_1029561	Ga0116197_10295611	F062884	MERDGREVDALSIFLMGLGVLLLVLGPCAGLYGIAMGFVALVGCWVVAITLRVFYFGGSRDDRRSRYV*
Ga0116197_1032455	Ga0116197_10324551	F055829	FWEEVQEAIDLVEKETGKKLPLSIIYTTEGELQGAHPDFAEAALRISRNEIERIGAPEHAKIGFILGEHGYPPGNGDEDVIGINQERVRRNMRRVYDTALPGLRKGITEYQLGMNEFNNHPDSWQPSSMERMVDYLHRGFDVIIFQPYYFTYETIDLFEHLRHWAFEVDGIDYHHEFHGGHEILPDYRSDFDFRGTRIIITGSLLGRYEKDGGRPSVQEAYKLFKGGVADTIARRLDSL*
Ga0116197_1034049	Ga0116197_10340492	F018530	VAVLEGIPGVSDTTKHFVQAVRLYMRDFPELNRLIAGEETSDRQIAWSVLDALSDFNSTPHFTNLTLEQLFQRNMQWLMLRLTVIAVIESVGLLQTRNHINYSTGGINVGINDKTPMLMNWLQYFRGITEQRKQQIKVALNIESILGPSNVGIHSEYWAVNATYLSY*
Ga0116197_1037334	Ga0116197_10373341	F058721	MRLVFQNERFIGYRCLMKPNSHNFRYDIENKKWEKLIIKTKPLLKYKEAPYEEEIDEPIAAEPI*
Ga0116197_1052814	Ga0116197_10528142	F030484	MVDKKEEAIDEAISKMSQIKKAAGDFRENVAGLVKDVNIESTDWRFNVESHKEGVTIDIAIKLLITKKEDLETSN*
Ga0116197_1068514	Ga0116197_10685141	F073077	FIRDNKEIFCIMEKPLKILFKQIPLNYSWIPFPQKLTVNPMILGRTVVVNDERFSEYMKHVDKWENELFWTDTANCSFEPIAVNKSEKPIAATVTINDRGRIHFLPRTTRISRAKSIRLLMNLSSRTEAAVEPSWLSSVEIPQSNRPQDQWNSSVPPEEYRKLFSADHKNVTKAAQIMLEDMGIQTIQNPEFGLLGLKENIVVKVASTKGKIEVQNVDVNHLARFIEHQRRNEKVVFIANTYSGLHPSQRADKEHLDLSVKLFFETSNVAFLTTLSLYN
Ga0116197_1075647	Ga0116197_10756471	F105450	VRKAVKTVSLEDRFKKFASEQEAPVGQRHGGYEKNLEYLNKVDSMVSGILETFCQAVGWGLKRNDCCDRDKGAVSCNYILEHRDFWREGFVAVDVEVTWGTYSDPLEAVTVYHGEVGGTGDHVRVYSSRIVIPFDKLTEERLAAALEQQSGNVIRRISYLQKPQ*
Ga0116197_1077230	Ga0116197_10772302	F024682	LSAEDELISKLQIEIGKKVPAMFNRMAKNMLANNKEVIINWLKDNKELVKEVIES*
Ga0116197_1081744	Ga0116197_10817442	F038920	VLTEILTDQQLIDLYTTDGYLVAVDYTKNEIKLHTVDCMLADPISSIGVKPTKSRENNTGEFWFSKNKDEANKKAEQIAKTKGYTYIICPICNR*
Ga0116197_1084041	Ga0116197_10840411	F105450	LFDLTWARKGVKTVTLEDRFKSFASEQKAPPDQQHDPYKRDVESMNKVDSIVSKVLEAFCHAVGWGLKRSDYCDRDKGAVSCNYILEHRDFCREGYLTVDVEVTRGYRSDPVEAVTLYQGAIMGATEHARDFASKVVIPFSQLREEGLATALEQQSRNLIRRIIRLEKPKPPISVERERPQKTVTLEDRFRRFVEAEEKAEWDRQHQ
Ga0116197_1090390	Ga0116197_10903902	F028081	DEKQALQRLQKIRKENDESYLKAKAFLDGFRARGQLSQKDNEFLFLMEFVIKGFKNHGNDIITAFENQVRFTEALNNFQTKINDLEKEIRQLRLTLDKMYRDK*
Ga0116197_1098339	Ga0116197_10983391	F070129	MQYSATTEALLQAIKQDVKHRVDEIVDEAEQAAMTLESERHVDQVLEQALALVEEALAEAAHAMAREIHRERAS*
Ga0116197_1098508	Ga0116197_10985082	F024682	MTPEDELISKLKAEIGKSLPPMFSGMAENMLENNKAVIIKWLVDNKDLVKQIIDK*
Ga0116197_1099847	Ga0116197_10998471	F060099	MKALRGAEEALEYLIKGVKGLEEPPTLAGRFDELELYLKRARMALKFV*
Ga0116197_1118859	Ga0116197_11188592	F004454	VDKHRRTVVEVRADLHQQIRKLALLNDLRIYVLANAIIEETLRDEEKTQTLIKRLSL*
Ga0116197_1121557	Ga0116197_11215571	F043801	MAKKLTGICPCGFSFTTPHGEDDAVAVMRYHVKLLHEKEYPNGQTRAEVMEHIKEVE*
Ga0116197_1125879	Ga0116197_11258791	F082709	VNNIPMCADAEGNNGDQRFNGIAYNSKRNEFLASWTDSREGMHNVGIVGRIVKADGTMPAKDFILVDAPGAQMISHSAYLPQQDKYFMAFEYSRNELDKFYFKDINARLDIGARWLGANGQPEGDLIDICSSEGNQRFVRFAHNAAGDTFLLVWQDDFPGVSDSVEGHIMSAGGTIMGALYKK*
Ga0116197_1160840	Ga0116197_11608402	F036302	YLTARQYGEVVLPDACTGQGPGTPRERGHKAVTVQGGYGALFAVMVQILLSITRVAVQG*