3300034134: Biocrust microbial communities from Mojave Desert, California, United States - 24HNC

Overview

Basic Information

• IMG/M Taxon OID: 3300034134
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0136120 | Gp0356244 | Ga0334928
• Sample Name: Biocrust microbial communities from Mojave Desert, California, United States - 24HNC
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 302615591
• Sequencing Scaffolds: 29
• Novel Protein Genes: 29
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9
All Organisms → cellular organisms → Bacteria → Acidobacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Biocrust Microbial Communities From Mojave Desert, California, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): desert biome → desert → soil biocrust
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000265	Metagenome / Metatranscriptome	1420	Y
F003495	Metagenome / Metatranscriptome	483	Y
F005545	Metagenome / Metatranscriptome	397	Y
F009385	Metagenome / Metatranscriptome	318	Y
F014784	Metagenome / Metatranscriptome	260	Y
F015256	Metagenome	256	Y
F018938	Metagenome / Metatranscriptome	232	Y
F020517	Metagenome	223	Y
F039537	Metagenome / Metatranscriptome	163	Y
F045796	Metagenome / Metatranscriptome	152	Y
F051828	Metagenome	143	Y
F061622	Metagenome / Metatranscriptome	131	Y
F061723	Metagenome	131	Y
F062140	Metagenome	131	Y
F063498	Metagenome / Metatranscriptome	129	Y
F068443	Metagenome	124	Y
F076687	Metagenome	117	Y
F081677	Metagenome	114	Y
F090706	Metagenome / Metatranscriptome	108	Y
F092677	Metagenome	107	Y
F093152	Metagenome	106	Y
F093899	Metagenome	106	Y
F095556	Metagenome / Metatranscriptome	105	N
F098802	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0334928_000399	All Organisms → cellular organisms → Bacteria	21842
Ga0334928_000756	All Organisms → cellular organisms → Bacteria	11510
Ga0334928_000765	All Organisms → cellular organisms → Bacteria	11423
Ga0334928_000816	All Organisms → cellular organisms → Bacteria	10679
Ga0334928_002946	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	3641
Ga0334928_003559	All Organisms → cellular organisms → Bacteria	3247
Ga0334928_004807	All Organisms → cellular organisms → Bacteria	2749
Ga0334928_004827	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2739
Ga0334928_008158	All Organisms → cellular organisms → Bacteria → Acidobacteria	2053
Ga0334928_010393	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1806
Ga0334928_015384	All Organisms → cellular organisms → Bacteria → Acidobacteria	1474
Ga0334928_021327	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1250
Ga0334928_022494	All Organisms → cellular organisms → Bacteria → Acidobacteria	1217
Ga0334928_024330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	1170
Ga0334928_025234	All Organisms → cellular organisms → Bacteria	1149
Ga0334928_027692	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1095
Ga0334928_028350	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1082
Ga0334928_030229	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1048
Ga0334928_041148	All Organisms → cellular organisms → Bacteria → Acidobacteria	900
Ga0334928_062326	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734
Ga0334928_076421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	665
Ga0334928_084137	All Organisms → cellular organisms → Bacteria → Acidobacteria	636
Ga0334928_096915	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	596
Ga0334928_101251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	583
Ga0334928_114494	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550
Ga0334928_122219	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534
Ga0334928_133783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	512
Ga0334928_138934	Not Available	503
Ga0334928_139852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0334928_000399	Ga0334928_000399_2753_3001	F005545	MEERNEQAVDDRGTSEAGGREILKRLRDEGFAADDEKLAVALGRPVEEVQGWMAEGGSDEPVDDDIIMKARGIAKERGIELE
Ga0334928_000756	Ga0334928_000756_5580_6134	F068443	VGTRLGDILERETSSHISVASFVDHYLRLLEFPADVTEALASGEINLFEAEQLARITAERLQGASGQARRTRANLLSAHLQTKASGTQLRQRVNELLKQPDATTQSDESSVENFADLEDFDPYDPTHLFWEQIKQLGFAFREIRREDVLDEEIEELLKASEPIMAVLSRIQRRKEQRGMTKLRL
Ga0334928_000765	Ga0334928_000765_9140_9262	F015256	MRRNVLFALLGLVLLFGSAGSSSAEVKRVEMHIGGYLCGN
Ga0334928_000816	Ga0334928_000816_2331_2564	F000265	MPELRGTLATPEVKAEWERAYEFYREAPGAPYDKKLDRTERISYVAQKMNLTRKQAKRRIRNYEAWQRNIKKGLVSK
Ga0334928_002946	Ga0334928_002946_2094_2285	F051828	MNTPNDLITALEARALLNVSRAKLSELFKRGILKTYENPLDRREKLVSKAEVLDLKPKRAEAA
Ga0334928_003559	Ga0334928_003559_751_1044	F093899	MAHIIEVVRDTAAEARSFLDALFYSDFVSAIGHRPDGERIRAVAVNWDANEEGEIDERISQMVTDAIEADDDLDEIAAYRRLFPETILYQPELDGIE
Ga0334928_004807	Ga0334928_004807_732_1001	F009385	MFILKAKTQLEKAIEKAKKIRPTVKFDHFGRYRVSGSKGGYYTVICKKSDNNYKLVECTCKGGESGLVCYHAAAALSLHIGIARQRQTA
Ga0334928_004827	Ga0334928_004827_223_522	F009385	MTNSKKRKEKKMFILKDKTQLERAIAKAMKIRPRVEFDRFGRYRVSGSKGYYTVVCRKDERGYKTVACTCKGAEKGLVCYHAVSALSLHIGLARRQQTV
Ga0334928_008158	Ga0334928_008158_1353_2000	F014784	MFEGLRHFNIEWHVIPSVEAVPFDDAYVGRLYPSAPHHFTKPREHGHVYREQLLHGHARHQGRIIGVETTRKPRYLPGNRQFYGTVYGHDPTADPLVAYMGRAGMMNGTRYAHNYLSLREFIRVVNEDWRARRLLPANYRVTICPPAVFNLVGTIFHPEWSETESLELGFYRDAQGNATCFAVGSNEPGDFSYISEIEGEGDWSLTGFRLALVPE
Ga0334928_010393	Ga0334928_010393_105_374	F009385	MFILKGKQQLEKAIERAKQIRPRVEFDCFGRYRVSGSKGGFYTVICKKSDNGYKTIECTCKAGDKGLVCFHSVAALSLHIGIARQRQTT
Ga0334928_015384	Ga0334928_015384_1077_1337	F076687	VNKASIKIIKRKYAEAAAAAEVKAQNSCKTKSAAVKSGEKVERSLHRKVADTVSNWIVERRENNRSKEISAIRHLFGDESLLSKTA
Ga0334928_021327	Ga0334928_021327_677_946	F009385	MFILKGKQQLEKAIEKAKKLRPRVEFDCFGRYRVSGSKGGFYTVICKKSDNGYKTIECTCRAGSENLVCFHAAAALSLHIGIARQRQTV
Ga0334928_022494	Ga0334928_022494_670_1002	F061723	MSEEATQNISNGGRDARSFEDRVFARFDALDSSVRALDSSVHDLDARLQKLEERAYDTKPIWEQALKEILETRRELSRRLDRIEAIAHETRADLRDAEDRIGKLESEPAR
Ga0334928_024330	Ga0334928_024330_426_1166	F095556	VLDNHDTVGRLVRVELSGPLARYTRPRRQPRLELQSRRQQEITLEVRPEDTRPEGGHVYDLHAVVVDEKSEAVVFTCSARVMVERAPSVAVRAERAEPYTVTNQDVVKLRVHVRNTGNVPLQVDAQKVNTDYWVRDDERRKEERLAHARRAVRGDRGVPRTPERLRPRQSHDFDLLVAPPAYPVGIRPRRWWVPIGVRGEDVDGECVFVDFVQRPRWELEQRMVVLAGAVVAALLVLIVFMALLAT
Ga0334928_025234	Ga0334928_025234_684_944	F020517	MFENEERQQKVGEKKRVSRDTKHYLVKRPNAILSSKLSWNQVQTELTEKATGADEAMLFRGIVTEDGTEYRDMYADSRTQVTEHAD
Ga0334928_027692	Ga0334928_027692_20_304	F093152	VNFITEDWQKRGLMPDGYRLTICPPVVFNLVGTIFHQEWSQTESLELGFYRDESNNAKCYAVGSNAPGDFSYIHEIEAESDWALLGFRVALVPE
Ga0334928_028350	Ga0334928_028350_196_426	F098802	MADKNRKKAYIGMEREENSVKYMAKVFDEQPRQITKAQYNAIVKALKAQDWANSVEDEESVISKIISSNLQTTDEV
Ga0334928_030229	Ga0334928_030229_67_672	F092677	MRVSPFLTALLVLSVAACGGQQPVDHQAEWRDVLRHKRAAVAPDASPEQKQLYADSVRAFVVKHPTHGRAAEVWQRLQLEFADDLAESGRYQDAVRIYRAVLTQHPENDRARSGLALAAARLAVSREGLLALRKGMSHRQVAALLGKPIPGWSVKNRRAGATFEAWYYRTRTGSLAGVYFREGKVFAAEESSNERLGRLGS
Ga0334928_041148	Ga0334928_041148_549_782	F098802	MAEDKDKTAYIRTEREENSVKYIAKVFNQPPAQITKSQYNAIVKALREQDWRNNEENEQSVISKIISRSLTVESDKL
Ga0334928_062326	Ga0334928_062326_529_732	F093152	FNLVGTIFHPEWSETETLELGFYRDEQGNATCFAVGSNAPGDFSYISEVEGEAEWSLMGFRLALVPE
Ga0334928_076421	Ga0334928_076421_420_572	F018938	LPCAFVQAADLLQQADAVPVFQVEQPVEVPVQVVRQEGDLLPQLVVGVVP
Ga0334928_084137	Ga0334928_084137_312_629	F039537	MVSKKSQRKAGVPAQRRGQQMGDETSAKDKTLEAKEQTPALRGRRKAASKFFADESSQAVASDGEAPRDNTPSVPAAIPTGKKLGESGGERQFKERQKAAKKGRR
Ga0334928_096915	Ga0334928_096915_3_119	F003495	EKENGNEISKLIKAFPKDIAALDKRSVLAKVNSQGSGR
Ga0334928_101251	Ga0334928_101251_114_410	F090706	VSEVVAFAWCALVVFTVATGALLVLLARALFRSIDRVDRVRDEVFSMAKTLETISVRLEHIESGLGQGDQRLGELRADLRSTMRRDMREILDGTATRS
Ga0334928_114494	Ga0334928_114494_1_255	F063498	LNDSKPEVALKFVSRALSLMVGQDITDFTLYQSLVELRVQILLVLGRDDDALASVEEAKEKLPNNPAIARWIEKLKKNRPRGEA
Ga0334928_122219	Ga0334928_122219_281_523	F081677	MATRNDDDIDYTAEGATPPREKEDPTNAGYDEAAHSGPGRYGVPEGEGGVFGTTGGGTFQGGLHEVERPTIETEKGEDEV
Ga0334928_133783	Ga0334928_133783_1_159	F061622	MTSWLLLLALITLFALAVRHGRTTDPPLPRGYDGERQIAELRGITAACANVRL
Ga0334928_138934	Ga0334928_138934_243_356	F045796	MTFNFSNLQQIAISAVGALLAASLFLSAAAGPVVQFV
Ga0334928_139852	Ga0334928_139852_310_423	F062140	MFIAIALGTVAVSAFGALAVMFGAEDRPGFNERSPLA