7000000670: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160158126

Overview

Basic Information

• IMG/M Taxon OID: 7000000670
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053246 | Ga0031047
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160158126
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 147533160
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F049707	Metagenome	146	N
F051212	Metagenome	144	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F059076	Metagenome	134	N
F092231	Metagenome	107	Y
F094006	Metagenome	106	Y
F097525	Metagenome	104	N
F098763	Metagenome	103	N
F099454	Metagenome	103	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C4860878	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1702
C4868247	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2115
C4871869	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2458
C4873083	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2602
C4880171	All Organisms → cellular organisms → Bacteria	5133
C4880940	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	6262
C4881744	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9503
SRS018157_Baylor_scaffold_35550	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	663
SRS018157_Baylor_scaffold_36626	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	949
SRS018157_Baylor_scaffold_45970	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus	1119
SRS018157_Baylor_scaffold_73300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	971
SRS018157_Baylor_scaffold_85156	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2960
SRS018157_Baylor_scaffold_85872	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	9223

Sequences

Scaffold ID	Protein ID	Family	Sequence
C4860878	C4860878__gene_248587	F094006	MRGTLEPAGPTGALHEPAVCMEAHIGELQAGRIARRSLFAFGGSNVLAVAELGAKAPYAIDMYDIALCKPLSELFGEELEYAFNFGA
C4868247	C4868247__gene_252784	F045567	MVTEDVVHTSTHRVEDALLAVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVNEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
C4871869	C4871869__gene_254933	F055792	MEIASQALDSTSAVAHRILLLTTQLGESLLASFGAEDGVIAEAMVPRALESNLPIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKTMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDLQTSREEGTDLLQLMVIIARKYQLFHTFVIISSASLRA
C4873083	C4873083__gene_255707	F053092	MQSDQGLILCLTHALLVLGALILESAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEEVLIGLQDALITTELVAELADTTVIASSDLTDPIAKDTLSEARLLDVFVSIVSYKLRFFRHK
C4880171	C4880171__gene_261432	F098763	MDRRASLRILSPALHLAMKLFEAVVRTTISYDPSDEVEGKGGMNAIPTTVDE
C4880940	C4880940__gene_262328	F105380	MSILELDSSQYVKQGRIFKKFDSSLLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGGRLVYNRLCKGRMMDDIGTDDYEAWKRTPVNRASNFVNKFISARGNSDLDFISNPIRSNVANNIKGYAEFLASITKEQENVNTYEEFIEWTKNTNWLK
C4881744	C4881744__gene_263606	F049707	VSEYRSPHNDGHDPYILIWEYGNDIRRAEFAERWAEYDETGWTIWYFRLVDGGIMTFSAREWEQKDDVNHLTTIHFQPKINSEGN
SRS018157_Baylor_scaffold_35550	SRS018157_Baylor_scaffold_35550__gene_41848	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFFELLGLLEWFEQISANKEKSTEIDFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFKKK
SRS018157_Baylor_scaffold_36626	SRS018157_Baylor_scaffold_36626__gene_43016	F059076	LGGVSINAQVINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNIRSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYKGLPIHNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYSFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTKTGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQPEGIGPNNTTYTTQLDNFLKKLE
SRS018157_Baylor_scaffold_45970	SRS018157_Baylor_scaffold_45970__gene_53756	F051212	FMKKFFFIFVLYWLHSCNGTEKAMTTSPDTQKTSISEKQNTEKIEKITYSQTGGDTGGKNVYLVITKDSIIYRLTEGVTDEKTITNLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTNKKEYSKTNIQNNTTWDYITKQIIDIKYSQLNNHLNLEK
SRS018157_Baylor_scaffold_73300	SRS018157_Baylor_scaffold_73300__gene_88854	F092231	MIIFAPQEFIMWTNTLIQFPWPIQVDDFSPYAERLGWKPGPRPTRFSVHDDEHVTLGDDEAGSICELFLHMAINDADDVEGAAELNDHLVSCVAAGRKVWGESFLLEAGDDPTATWRFPGDMFAQVTGGFAAVLFRFFTPEGRWYFL
SRS018157_Baylor_scaffold_85156	SRS018157_Baylor_scaffold_85156__gene_111400	F099454	MKASKLLWAVVMAFTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTIREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK
SRS018157_Baylor_scaffold_85872	SRS018157_Baylor_scaffold_85872__gene_113721	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIEISGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSTH