7000000631: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 338793263

Overview

Basic Information

• IMG/M Taxon OID: 7000000631
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053206 | Ga0028017
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 338793263
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26246782
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045567	Metagenome	152	N
F051213	Metagenome	144	N
F084342	Metagenome	112	N
F098763	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS050029_WUGC_scaffold_10650	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2714
SRS050029_WUGC_scaffold_189	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae	646
SRS050029_WUGC_scaffold_6986	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	5942
SRS050029_WUGC_scaffold_8353	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1199

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS050029_WUGC_scaffold_10650	SRS050029_WUGC_scaffold_10650__gene_15396	F045567	MCQRDGRDTLTEELEGGITPLLYRAEGEARRPWVGMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTEACGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKERPSLSSERGCVVERVVR
SRS050029_WUGC_scaffold_189	SRS050029_WUGC_scaffold_189__gene_128	F084342	AQCGAKLFLLGGYLAIPIRRPFFAQALKETLGQERGLGDAYDKDYQNEKALQWIHRRQILGICKEE
SRS050029_WUGC_scaffold_6986	SRS050029_WUGC_scaffold_6986__gene_8567	F098763	MDGRTSLRVLSPALYLATKLFEAVVWTTIADDSRDEVEGKGGMNAVPTAVDE
SRS050029_WUGC_scaffold_8353	SRS050029_WUGC_scaffold_8353__gene_10490	F051213	MKASKLLWAVVVALSFVFTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQKNETGKVRAVYLNTSTSGRHITLPDMRVTQRAK