NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000583

7000000583: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160643649



Overview

Basic Information
IMG/M Taxon OID7000000583 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0053148 | Ga0031295
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 160643649
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size93707176
Sequencing Scaffolds25
Novel Protein Genes26
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ82
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA4162
All Organisms → Viruses → Predicted Viral1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028722Metagenome / Metatranscriptome190Y
F033081Metagenome178Y
F045567Metagenome152N
F046433Metagenome151N
F047508Metagenome149N
F053092Metagenome141N
F055792Metagenome138N
F072446Metagenome121N
F078842Metagenome116N
F080164Metagenome115N
F080166Metagenome115N
F081510Metagenome114N
F084342Metagenome112N
F089055Metagenome109Y
F089057Metagenome109N
F092229Metagenome107N
F092230Metagenome107N
F095629Metagenome105N
F098763Metagenome103N
F099453Metagenome103N
F103433Metagenome101N
F103435Metagenome101N
F103436Metagenome101Y
F105379Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C3343923Not Available772Open in IMG/M
C3345371All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8787Open in IMG/M
C3351275Not Available860Open in IMG/M
C3364664All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA4161123Open in IMG/M
C3365780All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ81154Open in IMG/M
C3367440All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA4161205Open in IMG/M
C3373163All Organisms → Viruses → Predicted Viral1444Open in IMG/M
C3388754All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes5002Open in IMG/M
C3389086All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis5429Open in IMG/M
C3390834All Organisms → cellular organisms → Bacteria → Proteobacteria13385Open in IMG/M
SRS019974_Baylor_scaffold_10965All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae532Open in IMG/M
SRS019974_Baylor_scaffold_13703All Organisms → cellular organisms → Bacteria2043Open in IMG/M
SRS019974_Baylor_scaffold_156All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae2180Open in IMG/M
SRS019974_Baylor_scaffold_19165Not Available618Open in IMG/M
SRS019974_Baylor_scaffold_2828All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla934Open in IMG/M
SRS019974_Baylor_scaffold_36985All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1131Open in IMG/M
SRS019974_Baylor_scaffold_43023All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes9875Open in IMG/M
SRS019974_Baylor_scaffold_48977All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1124Open in IMG/M
SRS019974_Baylor_scaffold_49741All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1524Open in IMG/M
SRS019974_Baylor_scaffold_56768All Organisms → cellular organisms → Bacteria3016Open in IMG/M
SRS019974_Baylor_scaffold_56848All Organisms → cellular organisms → Bacteria3272Open in IMG/M
SRS019974_Baylor_scaffold_57102Not Available1897Open in IMG/M
SRS019974_Baylor_scaffold_57175All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae2460Open in IMG/M
SRS019974_Baylor_scaffold_57259All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2544Open in IMG/M
SRS019974_Baylor_scaffold_57918All Organisms → cellular organisms → Bacteria2340Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C3343923C3343923__gene_134846F055792VEIASEALDSTSAVAHRILLLTTQLGESLLASLGTEDGVIAEAMVTGALERDLAIDCTLEEVRPVFVDESDDGAEAGTTWRRYPLETLQKEGYILFEGRMLPCEACGVDSRSSVKSLDLEPRIIGKAIEAVALPDVACLDESISLQGIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVS
C3345371C3345371__gene_135411F105379MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYITPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNIGKITQLEPAKDNPEIAIHKPIVSVFNWDTEYIKACMNSLREYQIDDNIIARTDEFHNTDYYNELMAGSASTGASRISVGGYMIDIPKSAMPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIIVNQSMLFLPY
C3351275C3351275__gene_137891F072446TKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPEGTTYRVPVIPRSVEDKTEKEYNDMELGKEAHLVFRATVHGDTINRHKKELKALSLQLNRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLRGEMKLRIRDYSYRLKYPSGIITLDCENTESLTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGEVLSFQHKLPSKSVLQELPNKSVLENYQQYGFIPESTYFTTLWPLPDYKYNEREL
C3364664C3364664__gene_143697F080166VNILANFDNYNKVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGVNKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTIVDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLDDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMR
C3365780C3365780__gene_144216F095629KTMRELIICACLLGCFGVVNAAAPVEQPKEVKVVHNDDSVALHKKVYKLEQRVERLERLLAEKEGK
C3367440C3367440__gene_144984F099453LRRKDMNRFDIIELAQETLTFVYNTFNGKVNTLDQYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVEAHKFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRNEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQARLANLTNVVYTPKYPMAIAMGKLEYMLGRKFREFSNNNIEIEYVDRLKTHYSFMVCENRTYINSVNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA
C3373163C3373163__gene_147675F089057MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIISSNDKYSEVLSNILSSLNIDLDYHKLLLNAIESESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILGLFMTICIINKDIDKLASLCTGYLAITKDEVLVKNLMNESAMIAFRYMSDEDITKVALDIGSRSVLARYLSRM
C3374647C3374647__gene_148432F103435MKFVFCTEPIYQYYRSYLYADDKDKLDKQLMVEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYISQLISKLTYQYLIDSPEFETIFSEVLFNQSEAEFYEFYKAIFRFYNGSEVFIIVSNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVYSIRDDIDFSPQGAQLAYLQRAAYYKLEAKKNFEPLQIWYPFDMNTYTNALE
C3388754C3388754__gene_157684F081510MKFNLNAVKATAKTTWVTTKILGKKYAPVILLGAGLIGYGYSVYEGIKSGKKLEATKAKYEEMEAAGEEFSRVDVVKDIAKDVAIPVAVATASTASIILGFAIQTNRLKAVSAALAMVTEEHARYRLRAKTVLDEETFKKIDAPLETKTVNVDGEDIEVESIVPNEGDFYGMWFKKSHKYASDSPEYNEGVIKEADNVLTEKMMRKGMLTFAEVLDILGFEVPKAALPFGWTDTDGFYIEWDAHEVWNDDKQEYEVQFYVRWKTPRNLYATTNFHDFVPKKTRKELN
C3389086C3389086__gene_158101F053092MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHTVQLFGILIAKELSIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELTDTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
C3390834C3390834__gene_161345F103433MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGGITASVFAVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINQLVNLDNMANNSGKTYKYIIINVVNYLLLSAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE
SRS019974_Baylor_scaffold_10965SRS019974_Baylor_scaffold_10965__gene_11648F092230QIGCGSEGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDDIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNGSEYINMAYGEGSVEVSDSTATGEVQNTEEKEAHDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYGF
SRS019974_Baylor_scaffold_13703SRS019974_Baylor_scaffold_13703__gene_14600F046433MIELPTSPDALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMKSRYKTTEYEAINDFVQFIETTKHYLPDYMEYCAKELIDELVFLGMSELHFAATALAKRLRHHLEVDNNPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQYGGATYSVEACYRLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDELSLPALANIVRPYRNGKNFDGLSRFRQLLEKG
SRS019974_Baylor_scaffold_156SRS019974_Baylor_scaffold_156__gene_191F098763MDRRTSLRVLSTALYFATKLFKAVVRTTISYDSSDEVEGKGGMNAVPTTVDE
SRS019974_Baylor_scaffold_19165SRS019974_Baylor_scaffold_19165__gene_20605F028722RGIEERHKEITRSDYNIEDQYGPTHKDALSDGDPQGKGTGHGGHTHYLPDCTKPTGTIDYSNFDTDHGGGQYDIEGRNNISGRKRALAISMYNKENMYGPTLVDTSINRSDGQYFVGQTLKHS
SRS019974_Baylor_scaffold_2828SRS019974_Baylor_scaffold_2828__gene_2938F089055LKVEKMSSTPECVTNTPELDAARGELAAILSNAEQRDDNSKVSPELGKTAIDIENTNSTDNGAVDLCNQALGNYEKSLDRINNSPLKTVQAIGNSLQRLREYKTKEICE
SRS019974_Baylor_scaffold_36985SRS019974_Baylor_scaffold_36985__gene_41884F033081MHTDITVVYRPKKGVMAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPTRWATTTAWTVGVAGVFLMGNFTNYTPSQKFLHKIKATRYEVYNTILLLALLEEQAFRSGSERWNWRERVRASVCFGLLHITNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL
SRS019974_Baylor_scaffold_43023SRS019974_Baylor_scaffold_43023__gene_49191F081510MKLPKLNVKAIKAGAKTTYNTAKILGKKYAPIALVTTGLVGYGIAVYQGIKSGKKLEATKAKYEAKDAAGEEYTRLDVIKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTAVTEEHARYRLQCKEVLDEETFKKIDTPMDQVTVEEDGKEAQSFVPKEGLMYGNWFKYSANYASDSPEYNEQWIRESIRVLEEKIARKGLLNFSDMLDQLGFDVPKAALPFGWTDTDGFYIEYDIMEVWNAEEQVHEPQIYVRWKCPRNLYATTNFRDLIPGRKELA
SRS019974_Baylor_scaffold_48977SRS019974_Baylor_scaffold_48977__gene_56795F103436MVTSKDGFCDKSDAEILESLKAWVMKCDVKYVKSDALKKIDSAFALWANAQYVSALRLLDENEVFLKKSDWPYYALGIQILKVRKHEFLNE
SRS019974_Baylor_scaffold_49741SRS019974_Baylor_scaffold_49741__gene_57819F103436MITTSKDGWCAQSDAEILNSLKDWVSRCDVKYVKSDALKKIDSAFALWGGGRYVEAVHLLEENKVFLEKSDWPYYALGIQILRARKHEFFNE
SRS019974_Baylor_scaffold_56768SRS019974_Baylor_scaffold_56768__gene_70280F045567MVTEDVVHTSTHRVEDALLPIDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
SRS019974_Baylor_scaffold_56848SRS019974_Baylor_scaffold_56848__gene_70485F080164MVGLTLCAAPQVTLRERANAFPLITEKDASEIDAPYAWRLPVVPLSLDNREIRNFAKFPLLPSLSGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKSMHVYGVQKDGSRQAVDEHVTLHLPGFEKAEKPLHYKEQTGQLVLCEYYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRL
SRS019974_Baylor_scaffold_57102SRS019974_Baylor_scaffold_57102__gene_71248F092229IRFIRENGIDIGTGDDVLECMMDINPIIRTKIYDDYEFAKDVAECRFGSTIEGLDMVTLLQKCNTRPYNSILNNIYFRYFNSKLIDDLFELAQSPKILDLAIEYECEYYAINTAKTSIRRYNSDAYYNKFAADSNIVSSTRVLNNPQVNAVKSAEFTHELLMASRAEKFSPENVREIFIKYGLKPNPSRNLYNRINDNLNLFYYIEDYLDEYREEGKFIYGGKEYKGFKDIRSLPLMVVLIQLTRENASGYILNSKLELVKG
SRS019974_Baylor_scaffold_57175SRS019974_Baylor_scaffold_57175__gene_71431F084342LGGYLALLILRPFFAKAPKETLGQERGLGDAYDKDYQNEKALQWIHRCHILGICKKE
SRS019974_Baylor_scaffold_57259SRS019974_Baylor_scaffold_57259__gene_71712F078842MMISSIYKTADNDGLIAHIYEHLLAQYVLKCLQDNEFFVLSDIILFAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDDILRAANECGIEMNRNIVEVDRSELSKKLREVQLSPWCKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLGRDFLEYVKSLSSYVFCDNLQKALVRCSDNHKQVILNRSVLNAILGGCIIGGKGWLKMADSARIKQMINSIELDIYEVNS
SRS019974_Baylor_scaffold_57918SRS019974_Baylor_scaffold_57918__gene_73717F047508EAIATDAVLVIEFVGEPIHIGMLGHRLVEGRVKYPYLRDLGEYLRHGFDTEDVGWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLAFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP

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