| Basic Information | |
|---|---|
| IMG/M Taxon OID | 7000000583 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0053148 | Ga0031295 |
| Sample Name | Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160643649 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 93707176 |
| Sequencing Scaffolds | 25 |
| Novel Protein Genes | 26 |
| Associated Families | 24 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8 | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 | 2 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 1 |
| All Organisms → cellular organisms → Bacteria | 4 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae | 2 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Maryland: Natonal Institute of Health | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028722 | Metagenome / Metatranscriptome | 190 | Y |
| F033081 | Metagenome | 178 | Y |
| F045567 | Metagenome | 152 | N |
| F046433 | Metagenome | 151 | N |
| F047508 | Metagenome | 149 | N |
| F053092 | Metagenome | 141 | N |
| F055792 | Metagenome | 138 | N |
| F072446 | Metagenome | 121 | N |
| F078842 | Metagenome | 116 | N |
| F080164 | Metagenome | 115 | N |
| F080166 | Metagenome | 115 | N |
| F081510 | Metagenome | 114 | N |
| F084342 | Metagenome | 112 | N |
| F089055 | Metagenome | 109 | Y |
| F089057 | Metagenome | 109 | N |
| F092229 | Metagenome | 107 | N |
| F092230 | Metagenome | 107 | N |
| F095629 | Metagenome | 105 | N |
| F098763 | Metagenome | 103 | N |
| F099453 | Metagenome | 103 | N |
| F103433 | Metagenome | 101 | N |
| F103435 | Metagenome | 101 | N |
| F103436 | Metagenome | 101 | Y |
| F105379 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| C3343923 | Not Available | 772 | Open in IMG/M |
| C3345371 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8 | 787 | Open in IMG/M |
| C3351275 | Not Available | 860 | Open in IMG/M |
| C3364664 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 | 1123 | Open in IMG/M |
| C3365780 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8 | 1154 | Open in IMG/M |
| C3367440 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 | 1205 | Open in IMG/M |
| C3373163 | All Organisms → Viruses → Predicted Viral | 1444 | Open in IMG/M |
| C3388754 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 5002 | Open in IMG/M |
| C3389086 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis | 5429 | Open in IMG/M |
| C3390834 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 13385 | Open in IMG/M |
| SRS019974_Baylor_scaffold_10965 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 532 | Open in IMG/M |
| SRS019974_Baylor_scaffold_13703 | All Organisms → cellular organisms → Bacteria | 2043 | Open in IMG/M |
| SRS019974_Baylor_scaffold_156 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae | 2180 | Open in IMG/M |
| SRS019974_Baylor_scaffold_19165 | Not Available | 618 | Open in IMG/M |
| SRS019974_Baylor_scaffold_2828 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla | 934 | Open in IMG/M |
| SRS019974_Baylor_scaffold_36985 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 1131 | Open in IMG/M |
| SRS019974_Baylor_scaffold_43023 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 9875 | Open in IMG/M |
| SRS019974_Baylor_scaffold_48977 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus | 1124 | Open in IMG/M |
| SRS019974_Baylor_scaffold_49741 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus | 1524 | Open in IMG/M |
| SRS019974_Baylor_scaffold_56768 | All Organisms → cellular organisms → Bacteria | 3016 | Open in IMG/M |
| SRS019974_Baylor_scaffold_56848 | All Organisms → cellular organisms → Bacteria | 3272 | Open in IMG/M |
| SRS019974_Baylor_scaffold_57102 | Not Available | 1897 | Open in IMG/M |
| SRS019974_Baylor_scaffold_57175 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae | 2460 | Open in IMG/M |
| SRS019974_Baylor_scaffold_57259 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 2544 | Open in IMG/M |
| SRS019974_Baylor_scaffold_57918 | All Organisms → cellular organisms → Bacteria | 2340 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| C3343923 | C3343923__gene_134846 | F055792 | VEIASEALDSTSAVAHRILLLTTQLGESLLASLGTEDGVIAEAMVTGALERDLAIDCTLEEVRPVFVDESDDGAEAGTTWRRYPLETLQKEGYILFEGRMLPCEACGVDSRSSVKSLDLEPRIIGKAIEAVALPDVACLDESISLQGIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVS |
| C3345371 | C3345371__gene_135411 | F105379 | MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYITPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNIGKITQLEPAKDNPEIAIHKPIVSVFNWDTEYIKACMNSLREYQIDDNIIARTDEFHNTDYYNELMAGSASTGASRISVGGYMIDIPKSAMPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIIVNQSMLFLPY |
| C3351275 | C3351275__gene_137891 | F072446 | TKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPEGTTYRVPVIPRSVEDKTEKEYNDMELGKEAHLVFRATVHGDTINRHKKELKALSLQLNRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLRGEMKLRIRDYSYRLKYPSGIITLDCENTESLTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGEVLSFQHKLPSKSVLQELPNKSVLENYQQYGFIPESTYFTTLWPLPDYKYNEREL |
| C3364664 | C3364664__gene_143697 | F080166 | VNILANFDNYNKVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGVNKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTIVDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLDDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMR |
| C3365780 | C3365780__gene_144216 | F095629 | KTMRELIICACLLGCFGVVNAAAPVEQPKEVKVVHNDDSVALHKKVYKLEQRVERLERLLAEKEGK |
| C3367440 | C3367440__gene_144984 | F099453 | LRRKDMNRFDIIELAQETLTFVYNTFNGKVNTLDQYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVEAHKFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRNEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQARLANLTNVVYTPKYPMAIAMGKLEYMLGRKFREFSNNNIEIEYVDRLKTHYSFMVCENRTYINSVNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA |
| C3373163 | C3373163__gene_147675 | F089057 | MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIISSNDKYSEVLSNILSSLNIDLDYHKLLLNAIESESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILGLFMTICIINKDIDKLASLCTGYLAITKDEVLVKNLMNESAMIAFRYMSDEDITKVALDIGSRSVLARYLSRM |
| C3374647 | C3374647__gene_148432 | F103435 | MKFVFCTEPIYQYYRSYLYADDKDKLDKQLMVEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYISQLISKLTYQYLIDSPEFETIFSEVLFNQSEAEFYEFYKAIFRFYNGSEVFIIVSNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVYSIRDDIDFSPQGAQLAYLQRAAYYKLEAKKNFEPLQIWYPFDMNTYTNALE |
| C3388754 | C3388754__gene_157684 | F081510 | MKFNLNAVKATAKTTWVTTKILGKKYAPVILLGAGLIGYGYSVYEGIKSGKKLEATKAKYEEMEAAGEEFSRVDVVKDIAKDVAIPVAVATASTASIILGFAIQTNRLKAVSAALAMVTEEHARYRLRAKTVLDEETFKKIDAPLETKTVNVDGEDIEVESIVPNEGDFYGMWFKKSHKYASDSPEYNEGVIKEADNVLTEKMMRKGMLTFAEVLDILGFEVPKAALPFGWTDTDGFYIEWDAHEVWNDDKQEYEVQFYVRWKTPRNLYATTNFHDFVPKKTRKELN |
| C3389086 | C3389086__gene_158101 | F053092 | MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHTVQLFGILIAKELSIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELTDTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK |
| C3390834 | C3390834__gene_161345 | F103433 | MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGGITASVFAVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINQLVNLDNMANNSGKTYKYIIINVVNYLLLSAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE |
| SRS019974_Baylor_scaffold_10965 | SRS019974_Baylor_scaffold_10965__gene_11648 | F092230 | QIGCGSEGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDDIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNGSEYINMAYGEGSVEVSDSTATGEVQNTEEKEAHDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYGF |
| SRS019974_Baylor_scaffold_13703 | SRS019974_Baylor_scaffold_13703__gene_14600 | F046433 | MIELPTSPDALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMKSRYKTTEYEAINDFVQFIETTKHYLPDYMEYCAKELIDELVFLGMSELHFAATALAKRLRHHLEVDNNPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQYGGATYSVEACYRLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDELSLPALANIVRPYRNGKNFDGLSRFRQLLEKG |
| SRS019974_Baylor_scaffold_156 | SRS019974_Baylor_scaffold_156__gene_191 | F098763 | MDRRTSLRVLSTALYFATKLFKAVVRTTISYDSSDEVEGKGGMNAVPTTVDE |
| SRS019974_Baylor_scaffold_19165 | SRS019974_Baylor_scaffold_19165__gene_20605 | F028722 | RGIEERHKEITRSDYNIEDQYGPTHKDALSDGDPQGKGTGHGGHTHYLPDCTKPTGTIDYSNFDTDHGGGQYDIEGRNNISGRKRALAISMYNKENMYGPTLVDTSINRSDGQYFVGQTLKHS |
| SRS019974_Baylor_scaffold_2828 | SRS019974_Baylor_scaffold_2828__gene_2938 | F089055 | LKVEKMSSTPECVTNTPELDAARGELAAILSNAEQRDDNSKVSPELGKTAIDIENTNSTDNGAVDLCNQALGNYEKSLDRINNSPLKTVQAIGNSLQRLREYKTKEICE |
| SRS019974_Baylor_scaffold_36985 | SRS019974_Baylor_scaffold_36985__gene_41884 | F033081 | MHTDITVVYRPKKGVMAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPTRWATTTAWTVGVAGVFLMGNFTNYTPSQKFLHKIKATRYEVYNTILLLALLEEQAFRSGSERWNWRERVRASVCFGLLHITNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL |
| SRS019974_Baylor_scaffold_43023 | SRS019974_Baylor_scaffold_43023__gene_49191 | F081510 | MKLPKLNVKAIKAGAKTTYNTAKILGKKYAPIALVTTGLVGYGIAVYQGIKSGKKLEATKAKYEAKDAAGEEYTRLDVIKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTAVTEEHARYRLQCKEVLDEETFKKIDTPMDQVTVEEDGKEAQSFVPKEGLMYGNWFKYSANYASDSPEYNEQWIRESIRVLEEKIARKGLLNFSDMLDQLGFDVPKAALPFGWTDTDGFYIEYDIMEVWNAEEQVHEPQIYVRWKCPRNLYATTNFRDLIPGRKELA |
| SRS019974_Baylor_scaffold_48977 | SRS019974_Baylor_scaffold_48977__gene_56795 | F103436 | MVTSKDGFCDKSDAEILESLKAWVMKCDVKYVKSDALKKIDSAFALWANAQYVSALRLLDENEVFLKKSDWPYYALGIQILKVRKHEFLNE |
| SRS019974_Baylor_scaffold_49741 | SRS019974_Baylor_scaffold_49741__gene_57819 | F103436 | MITTSKDGWCAQSDAEILNSLKDWVSRCDVKYVKSDALKKIDSAFALWGGGRYVEAVHLLEENKVFLEKSDWPYYALGIQILRARKHEFFNE |
| SRS019974_Baylor_scaffold_56768 | SRS019974_Baylor_scaffold_56768__gene_70280 | F045567 | MVTEDVVHTSTHRVEDALLPIDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR |
| SRS019974_Baylor_scaffold_56848 | SRS019974_Baylor_scaffold_56848__gene_70485 | F080164 | MVGLTLCAAPQVTLRERANAFPLITEKDASEIDAPYAWRLPVVPLSLDNREIRNFAKFPLLPSLSGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKSMHVYGVQKDGSRQAVDEHVTLHLPGFEKAEKPLHYKEQTGQLVLCEYYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRL |
| SRS019974_Baylor_scaffold_57102 | SRS019974_Baylor_scaffold_57102__gene_71248 | F092229 | IRFIRENGIDIGTGDDVLECMMDINPIIRTKIYDDYEFAKDVAECRFGSTIEGLDMVTLLQKCNTRPYNSILNNIYFRYFNSKLIDDLFELAQSPKILDLAIEYECEYYAINTAKTSIRRYNSDAYYNKFAADSNIVSSTRVLNNPQVNAVKSAEFTHELLMASRAEKFSPENVREIFIKYGLKPNPSRNLYNRINDNLNLFYYIEDYLDEYREEGKFIYGGKEYKGFKDIRSLPLMVVLIQLTRENASGYILNSKLELVKG |
| SRS019974_Baylor_scaffold_57175 | SRS019974_Baylor_scaffold_57175__gene_71431 | F084342 | LGGYLALLILRPFFAKAPKETLGQERGLGDAYDKDYQNEKALQWIHRCHILGICKKE |
| SRS019974_Baylor_scaffold_57259 | SRS019974_Baylor_scaffold_57259__gene_71712 | F078842 | MMISSIYKTADNDGLIAHIYEHLLAQYVLKCLQDNEFFVLSDIILFAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDDILRAANECGIEMNRNIVEVDRSELSKKLREVQLSPWCKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLGRDFLEYVKSLSSYVFCDNLQKALVRCSDNHKQVILNRSVLNAILGGCIIGGKGWLKMADSARIKQMINSIELDIYEVNS |
| SRS019974_Baylor_scaffold_57918 | SRS019974_Baylor_scaffold_57918__gene_73717 | F047508 | EAIATDAVLVIEFVGEPIHIGMLGHRLVEGRVKYPYLRDLGEYLRHGFDTEDVGWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLAFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP |
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