7000000574: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160582958

Overview

Basic Information

• IMG/M Taxon OID: 7000000574
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053139 | Ga0031045
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160582958
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 164340744
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus cereus group → Bacillus cereus	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043991	Metagenome	155	N
F047508	Metagenome	149	N
F054109	Metagenome	140	N
F059076	Metagenome	134	N
F063777	Metagenome	129	N
F084342	Metagenome	112	N
F084362	Metagenome	112	N
F089056	Metagenome	109	N
F094006	Metagenome	106	Y
F097525	Metagenome	104	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C5335884	All Organisms → Viruses	754
C5345468	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	804
SRS017691_Baylor_scaffold_1346	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	29584
SRS017691_Baylor_scaffold_26049	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	714
SRS017691_Baylor_scaffold_26244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus cereus group → Bacillus cereus	578
SRS017691_Baylor_scaffold_61967	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5054
SRS017691_Baylor_scaffold_64631	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1343
SRS017691_Baylor_scaffold_67008	Not Available	1317
SRS017691_Baylor_scaffold_74311	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	6272
SRS017691_Baylor_scaffold_77734	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	8631
SRS017691_Baylor_scaffold_77888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	66445

Sequences

Scaffold ID	Protein ID	Family	Sequence
C5335884	C5335884__gene_259035	F105377	VRDFNELPLLTPEEAFERAREMGWNRPLFDLDYRVRGPVDWKTLETLLRQYDVEDAVMASFGLKSFEEILDVISMLHERGWHLWQTSAKVYVGGELKAVQAIRARYPGD
C5345468	C5345468__gene_263917	F089056	VFLKTQKMNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHAFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEKIVFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
SRS017691_Baylor_scaffold_1346	SRS017691_Baylor_scaffold_1346__gene_1251	F094006	MAEELAKAPLTALSRARVAAMWSALEPAGPTGALYESAVCVEAHIGELQTGGIVRRSLFAFGGSNVLAVAELGAEAPHAIDMHDIAVCEPLSELFAEELEYAFNFGA
SRS017691_Baylor_scaffold_26049	SRS017691_Baylor_scaffold_26049__gene_24441	F063777	LKVLNIKISALPPENNSFWMKLLLYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHFNDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLEFDSETKTIN
SRS017691_Baylor_scaffold_26244	SRS017691_Baylor_scaffold_26244__gene_24627	F097525	MQQKKIMFKIQNAHQKIIFSIHGHRKRKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQILANQETPAEIGFIEPELAFEYKNKKLIVLLCYDIAPVSYGEEPYELTFSLDDKTLAMIIKELGEAVASFKKE
SRS017691_Baylor_scaffold_61967	SRS017691_Baylor_scaffold_61967__gene_64793	F043991	MSKRNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNIKPSWIGKYSQQMHFDLTDGTEVSFYKGRNVIYADILFSGGIRTILFKCRQKKNLTRFISRVLELSQGDPSNIHPDFRA
SRS017691_Baylor_scaffold_64631	SRS017691_Baylor_scaffold_64631__gene_68303	F059076	TRTLTIKNSTPNDGKPVLRLVDAPIYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYTFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTQNGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQAEGIGPSNTTYTTQLQNFLKKLE
SRS017691_Baylor_scaffold_67008	SRS017691_Baylor_scaffold_67008__gene_72033	F084362	MNCTFTVRWSDENNKPHAKTYATEADARKAKQWLLERGVRDVDIAVRVNNKSAGGLQNDEKKSESTAEQKGFWWQE
SRS017691_Baylor_scaffold_74311	SRS017691_Baylor_scaffold_74311__gene_84618	F047508	MLGHRLVEGRVKYPYLRDIGEYLRHSFDTEDVGWVVKWSKLRALMEHIYHLRGDTYALSKALCTVYEAVTDGVDLIEGLHEVLFFENVEDNLYAACVVRDVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS017691_Baylor_scaffold_77734	SRS017691_Baylor_scaffold_77734__gene_94542	F084342	LGGYLAVPIRRPFFAQSLKKTLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE
SRS017691_Baylor_scaffold_77888	SRS017691_Baylor_scaffold_77888__gene_96102	F054109	MFKEKTYMTGRSKSKKGVKVHTAFKIYPKDKERAQIMADKLDMSLSAYINKAVLEKLAHDEKSEA