7000000563: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763820215

Overview

Basic Information

• IMG/M Taxon OID: 7000000563
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053122 | Ga0031238
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763820215
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 61633718
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F040149	Metagenome	162	N
F042387	Metagenome	158	N
F043235	Metagenome	156	N
F047508	Metagenome	149	N
F051213	Metagenome	144	N
F054110	Metagenome	140	N
F061926	Metagenome	131	N
F063777	Metagenome	129	N
F067846	Metagenome	125	Y
F073671	Metagenome	120	N
F080165	Metagenome	115	N
F089055	Metagenome	109	Y
F098763	Metagenome	103	N
F105376	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2570592	Not Available	515
C2571380	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	520
C2582308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca	591
C2593508	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	701
C2597698	Not Available	757
C2603888	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	866
C2606121	Not Available	915
C2614323	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1193
C2617053	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1350
C2625508	All Organisms → Viruses → Predicted Viral	2718
SRS014124_WUGC_scaffold_12375	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	988
SRS014124_WUGC_scaffold_16610	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	10041
SRS014124_WUGC_scaffold_27343	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena	3336
SRS014124_WUGC_scaffold_31869	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	8409
SRS014124_WUGC_scaffold_39387	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1068

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2570592	C2570592__gene_86498	F067846	MSIIADWERQEFNKYDRRCCAEDAYNEAVEREIECIEEDISNGDSDALCAFSEKMFDDDEFLKAVALGTDCEEMRIKILTAMAEDRLKQLEEDYRKGYILND
C2571380	C2571380__gene_86799	F063777	SALPPENNSFWMKLLLFLCIPFLFIFAILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKIIVLADIKDF
C2582308	C2582308__gene_90878	F047508	ATDAVLVIEFVGERVHIGMLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
C2593508	C2593508__gene_95194	F098763	MDRRTSLRVLSPALYLATKLFKAVVRTTISYDSSDEVEGKGGMNAIPTAVDE
C2597698	C2597698__gene_96875	F054110	QMNGRRYVVDIRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGD
C2603888	C2603888__gene_99448	F089055	LKVEKMNSTPECVTKTPEIEAREKLAAIFSDAEQRSDNSKVNPELGKTAIDIENTSKMDSADNGAVDFCNQALGSYGKSLDYINNSPLETVQAIGNSLQLFREDKTKESCK
C2606121	C2606121__gene_100436	F105376	MNKNKKEGNMEPEVSAKEFGALWANVEHIKEGVDKHTVTLERIENIARTNVTQEQLKAHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQTVRRK
C2614323	C2614323__gene_104076	F042387	MAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYSGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWASHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQ
C2617053	C2617053__gene_105384	F040149	VADEGAEKLWWEVLIKEQGIPVLFVEVVAWYDGRVSSSEILSSVGIALEREPRLTPVWSHDSEDAIDYFIYDISVPEGHTLTAVRERETVVAQLLNIHRYVYYP
C2625508	C2625508__gene_110055	F073671	MNKQQTEHELAELHEKERSLEKALELVREKIRELVNYTDKNKV
SRS014124_WUGC_scaffold_12375	SRS014124_WUGC_scaffold_12375__gene_13666	F051213	VVMALTFVFTSCDPFSQNEPTIEGDRYKYFDSSAQRQSFRVVNGSGKPYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK
SRS014124_WUGC_scaffold_16610	SRS014124_WUGC_scaffold_16610__gene_18308	F080165	MKNIKILLLLLSLTACNNKTKTISTLDLEKVVINYKELPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHDPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEKDSLKYTFTRYILR
SRS014124_WUGC_scaffold_27343	SRS014124_WUGC_scaffold_27343__gene_30665	F061926	RYQIMMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
SRS014124_WUGC_scaffold_31869	SRS014124_WUGC_scaffold_31869__gene_36381	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAVKGGNATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINNQHISYNSQSAEYSKPQLFLLYQSLKVDC
SRS014124_WUGC_scaffold_39387	SRS014124_WUGC_scaffold_39387__gene_46024	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVL