7000000523: Human palatine tonsils microbial communities from NIH, USA - visit 2, subject 763496533

Overview

Basic Information

• IMG/M Taxon OID: 7000000523
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053077 | Ga0029715
• Sample Name: Human palatine tonsils microbial communities from NIH, USA - visit 2, subject 763496533
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 91718760
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Kingella → Kingella oralis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Palatine Tonsils → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046432	Metagenome	151	Y
F047508	Metagenome	149	N
F064818	Metagenome	128	N
F073671	Metagenome	120	N
F078842	Metagenome	116	N
F081454	Metagenome	114	N
F094006	Metagenome	106	Y
F097490	Metagenome	104	N
F103435	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2146336	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	619
C2153141	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	662
C2174298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Kingella → Kingella oralis	859
C2197751	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1421
C2201695	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1643
C2204125	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1830
SRS019126_WUGC_scaffold_24026	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	844
SRS019126_WUGC_scaffold_26852	All Organisms → cellular organisms → Bacteria	2887
SRS019126_WUGC_scaffold_42151	All Organisms → Viruses	39231

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2146336	C2146336__gene_119287	F046432	MWEMTESELSEVISKYQMPEGRYLVEQEGSFGESEFFWVIKNQSTNQKYLLMNTYSHHGVEAEVEYYREEGFENLEAIPRKIETLENTSDADDEISKYLFGMYSIFEIKS
C2153141	C2153141__gene_122219	F097490	KIILPLLCIISCSERKEIEVYNMELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQDIEGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMREIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C2166537	C2166537__gene_128344	F103435	QDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYSYLIDNPEFENIFSEILFNQSEEEFYEFYKAIDRFYNGSEIFIIVSNDEYSDMVTQMMCNVIRRMYGIHPQVIYDIDDILNIRDDIDFSPQGAQLAYLQRSAYYKLEAKRSLEPLQIWYPFDMNTYTNALE
C2174298	C2174298__gene_132004	F064818	MGERKKYPIPNNINGNAPKLYFTNHKFIVVLLPYFTYMDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLTIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK
C2197751	C2197751__gene_144165	F081454	MKVFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMIMNIKYTLLKVEKEEAYFDMLIDFVMGDKNVKNMDMSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVITQQKIK
C2201695	C2201695__gene_146579	F046432	MWEMTESKLSNIISKYQLPMDDYLVEVDGAFGRGEFFWVIKNQSTNKKYLLVNTYSHHGIESELECYREGGFDNLEAIPRKIETLENASDAEDEISKYLFGMYSIFEMKS
C2204125	C2204125__gene_148108	F078842	MIISSIYKTADNDGLIAHVYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWCKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDNLFRECVLEYSIDESHIQTPIDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSSVFCDNLRKALVRCSDNHKQVILDRSTLNAILGGCVIGGKGWLEMADSARIRQMINSIELDVYEVKS
SRS019126_WUGC_scaffold_24026	SRS019126_WUGC_scaffold_24026__gene_31399	F094006	MRGALEPADPTGALYESAVCVEAHIGELQAGGIACRSLFAFEWSNVLAVAELGAKAPHAINMYDIAVCEPLSELFAEELEYAFNLGA
SRS019126_WUGC_scaffold_26852	SRS019126_WUGC_scaffold_26852__gene_35542	F047508	MLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS019126_WUGC_scaffold_42151	SRS019126_WUGC_scaffold_42151__gene_65113	F073671	MNKEQAEHELAELHEKEQSLEKALELVREKIRELVNYTDKNKEQK