7000000519: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160178356

Overview

Basic Information

• IMG/M Taxon OID: 7000000519
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053072 | Ga0031274
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160178356
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 91884387
• Sequencing Scaffolds: 24
• Novel Protein Genes: 25
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2
Not Available	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. KLE 1280	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F033081	Metagenome	178	Y
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F047508	Metagenome	149	N
F051210	Metagenome / Metatranscriptome	144	Y
F051213	Metagenome	144	N
F055792	Metagenome	138	N
F071328	Metagenome	122	N
F073671	Metagenome	120	N
F080165	Metagenome	115	N
F080166	Metagenome	115	N
F081454	Metagenome	114	N
F089056	Metagenome	109	N
F089057	Metagenome	109	N
F090517	Metagenome	108	N
F092229	Metagenome	107	N
F095633	Metagenome	105	N
F097525	Metagenome	104	N
F099453	Metagenome	103	N
F099454	Metagenome	103	N
F103435	Metagenome	101	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3867014	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	511
C3871770	Not Available	527
C3885335	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	579
C3920805	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	839
C3925536	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	904
C3930440	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. KLE 1280	989
C3938211	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1180
C3943157	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1365
C3947335	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1604
C3948501	All Organisms → Viruses → Predicted Viral	1697
SRS018357_Baylor_scaffold_20210	All Organisms → cellular organisms → Bacteria	903
SRS018357_Baylor_scaffold_28185	All Organisms → Viruses → Predicted Viral	1061
SRS018357_Baylor_scaffold_34803	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	837
SRS018357_Baylor_scaffold_41345	All Organisms → Viruses → Predicted Viral	3883
SRS018357_Baylor_scaffold_41922	Not Available	7291
SRS018357_Baylor_scaffold_43705	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1283
SRS018357_Baylor_scaffold_44527	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1366
SRS018357_Baylor_scaffold_48756	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	695
SRS018357_Baylor_scaffold_49608	All Organisms → cellular organisms → Bacteria	2525
SRS018357_Baylor_scaffold_51726	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	2869
SRS018357_Baylor_scaffold_52298	Not Available	1458
SRS018357_Baylor_scaffold_52647	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	647
SRS018357_Baylor_scaffold_53726	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	8102
SRS018357_Baylor_scaffold_9400	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1284

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3867014	C3867014__gene_121164	F051213	KASKLLWAVVVALTFVLTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK
C3871770	C3871770__gene_123281	F089057	GCTIYIVLEVNMINVIPLIAKKYNRKGDTSGSLKSLISDLNCVTDNDDVLLFLTSIPRETKYSLDDAFDIITSNDNYNGIFKNTIVYLNMDLDYHRLLLNAIKSESYNIICTINEAIPTPDLFLSKNNYECLTIALDKSYTVFDKILGMIISQIRHTASSKEGRALGIFMTLCIL
C3885335	C3885335__gene_129276	F095633	MRNYENSTEVGCREGLTEGELRTMGTLAMEATEELKKTTISKEAVLLGGVPFGSWDEFAKAVQEMAAHIYEPIPVKINTKRLIATAFLDDGGEMSVEEHSVPEEVFIDLSRTRCVVDEDRSHKSYEFTCPVLKKFPDGELYPIREAYVISAIDVNGSQEVDF
C3920805	C3920805__gene_145946	F080165	MKNIKILLLLLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQALQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYIPNHYNIYEKDSLKYTFTKYILK
C3925536	C3925536__gene_148277	F081454	MKTFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDEDTKKILTESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQWGDIEMIMNIKYTLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGGGKGFLLFDMKNNYFTNQNIDMTINLKLKTELLTLENTSKAKSVIIQQKIK
C3930440	C3930440__gene_150786	F090517	LGLLFLASSCKNKKDTPRLQLSSVELRQTVWNGTLEYKNPKRDSYSVYLNFLSDSEVEVSGYDLKDPTYSRDLQVRYYYTITDRILTLKAQVNRELRPPMDQNTWYLIRKEPSLLVFQANAGNPDLEATLTLRKKL
C3938211	C3938211__gene_155009	F042387	MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYSGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWASHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK
C3943157	C3943157__gene_157822	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFKKV
C3947335	C3947335__gene_160419	F043990	MIKKLGIIFTFGVIILGIVVYVNHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDNSFTKLNKLPIKEGLPPNGIPKQFLNTANGYYKYVVDENDDRDFGILIVDTTRKEICIYYQIL
C3948501	C3948501__gene_161204	F080166	ENYNKVVEVIFELNYKLTLKMEVTFNGILKRLGNDVKENFHTEYIVNSGSLTTNVKYRYRMKLSPKGEQTCVYIDWDNYDDLFNVLEESIKICDPENPRTPFKRTYSDKGDLLDIRCNSLQVKYQHLNDRFGNTIDLIPFVLVDEQSGLLTEAIRFRFNNELVYDVPISRLKGFRRFLMTYNPLLHAGAMARYMAMTPLLGSNRQNMMRS
C3955289	C3955289__gene_166269	F103435	MKFVFCTEPIYQYYRACVYNADKDKLDKQLLVEYGDYKDIWDLKQQQDALPENIFKAELTSRDYPRNPWNYVSQLINKLTYQYLIDSPEFENIFSEILFNQSEREFYEFYKAIDRFYNGSEIFITVGNDDYSDMVTQMVCSVLRRTYGIRPQIIYDIDDVHSIRDDIDFSPEGAQIAYLQRHTYLALEAKSTVEPLRVWYPFDMNSYTNALE
SRS018357_Baylor_scaffold_20210	SRS018357_Baylor_scaffold_20210__gene_20031	F047508	MLGHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS018357_Baylor_scaffold_28185	SRS018357_Baylor_scaffold_28185__gene_28472	F089057	MTNIIPIIAKKYNRKGDTSGSLKSLVSDLNCIDNVDDSLLFLSSIPRETKYTLDEVFDLITSDDIYIKIFGNVLTFLNMDLDYHRLLLNAIKSESYKIISIINESIPTPDLFLAKNNYECLSVALDKPFVIFDKILGMVVSQLLHTASSKEERIFGIFMTICIINREINKLASLCTGYLAITRD
SRS018357_Baylor_scaffold_34803	SRS018357_Baylor_scaffold_34803__gene_35402	F030786	LLLKNGSATKGGNATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
SRS018357_Baylor_scaffold_41345	SRS018357_Baylor_scaffold_41345__gene_42681	F073671	MNKETEHELAELHEKERSLEKALELVREKIRELVNYTDKNK
SRS018357_Baylor_scaffold_41922	SRS018357_Baylor_scaffold_41922__gene_43322	F051210	MNNYSQILGNSAMMDALRASSVSAEDARLRGNEYAKMFSRNEEMMDVFGLGGNNANLLQKTFSGYSETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDLRSVLPNLGPDQYQDVQVMGGFELPVTVNAGTAAYSPLVGRKLIPGTVRVKVEDGTGKKYELIDNGQGSFMAVAGVLKTGTVNYLNGKIDFELTTAVPANGSITIVGKEDTTGTPSCTNGASNAHANDKRFIAKMQQIALNTVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKTINFKLVSTLEKGYAGNVMDDLDLSNAPASLASKFMDYRSRVDLFDAYLINVESALATKAVKGVTTTAYIAGNQAANQFQKGGVIGKFERNTKMTYISDLLGWYDGVPVLRSTDIQEKAGEGTFYAIHKTQDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYLAPELVQKVSFKFGF
SRS018357_Baylor_scaffold_43705	SRS018357_Baylor_scaffold_43705__gene_45269	F089056	VFLKTQKMNVFCRIILPLLCIISCSKRKEADNTMVLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFIAITFTNKNKILFGKGIQ
SRS018357_Baylor_scaffold_44527	SRS018357_Baylor_scaffold_44527__gene_46190	F099453	DMNRFDIIELAQQTITFVHSAFNGKVNALDPYTRLNFVAGYLDKKTNIARTTPYGCIYVSLEAFADTVEAYKFIDTDQIRNLALEIIIHELTHVDQLIDYRYIKFNNGYREEIERQCVKQSCQWILDNIQFIRSLGLVVIPEVYEERLVGLPDVTYSFKNPAVIAMSKLEHMIGKKFKEFNSNDIEIHYVDRLKNYYKIPVCANRMYQNSQNLNDLGERLLNDKQYTIEYMEYGNSKLVIKITQGA
SRS018357_Baylor_scaffold_48756	SRS018357_Baylor_scaffold_48756__gene_51826	F099454	KASKLLWAVVVALTFVFTSCDRVTDEPTIEGKMNKFFDSQAQHKSFRVLTASGKPYNHKIDWHIIGILDPKSETYLTKKVDTLSNGDLKISYDWVAFIVKENKSVIDVEVQKNETGQDRSVDFVAKDNHKGLDSPSMTIIQRAK
SRS018357_Baylor_scaffold_49608	SRS018357_Baylor_scaffold_49608__gene_53159	F071328	MSRKHWTFINLIRYIEEYERNPLLIERMKWKFIPEGECIVEFVELCKHLVLERTIDSKEPLTTAIYLRYSSQLLLKKKRAIRRLGIEKENISAILRQCGRHYKEYGDDEHRVFFLDTDVNIYFCKHYQLPMYIIQRIEFSNKESRPFILKVLPVKRSEW
SRS018357_Baylor_scaffold_51726	SRS018357_Baylor_scaffold_51726__gene_56837	F092229	MPEVVLRNVKFIRENNIDIGTGDDVLDCMMEINPVLRQRIYDDYDLAKDVAERRFRSTIEELDLATVLQKVTTRPYIAILNNIFFRYFNSKLIDDMFKLGESTKVLDLAIEYECEYYTINSAKTNIRRYMQQAYFDKYAADSNIISSHRVLNDPQVNAVKSAEFTYDLFTAARSEKFNPEMVRDIFLKYGLKTNSSRNLYTRMNNNLSLYYYMEDYLTEYMLKGSFTYGSQVYSTIKEFKCLPLMNVLTQLTRPNPSGYVLDSNLELVKG
SRS018357_Baylor_scaffold_52298	SRS018357_Baylor_scaffold_52298__gene_58025	F055792	VEIAGEALDSTSAVAHRILLLTTQLGESLLASLGAEDGVIAEAMVTGALERDLAIDCALEEVRPVFVDKGDDGTEASTTWGRYPLETLQKESYILFEGSMLPCEACGVDSRSSVKSLDLEPRIIGKAIEAVALPDVTCLDESIPLQGIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVS
SRS018357_Baylor_scaffold_52647	SRS018357_Baylor_scaffold_52647__gene_58713	F095633	MGNYENSTEVGRGEGLTEGELRTMGALAVEATEKLRKTTVRKETVLLGSVPFGSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDRGEMSVEEHSVPEEVFIDLSRTRCVVDADRSHKSYEFTCPVLKKYPDGELYPIREAYVISAIDVNGSQEVDFKII
SRS018357_Baylor_scaffold_53726	SRS018357_Baylor_scaffold_53726__gene_61721	F105380	MSILELDATQYVKQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSREESYFPNGKRLKLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRSKVPSHNIKKCAVFLGTITKEQENVNTYEEFMEWTKNTKWFK
SRS018357_Baylor_scaffold_9400	SRS018357_Baylor_scaffold_9400__gene_9346	F033081	MHTDITVVYRPKKGVMAWLFRRAMPQDTRPTFVWPKLVTAIENAGYFSRRKFSILAVGLIVMTIAMVKMLLFVPGLNQSVVSLLTRGLEAFLPAGWATVTAWAVGAAGFFLMGDLTNYTPSQKFLHKIKATRYEVYNTILFLALLEEQAFRSGSERWNWRERVRASVCFGLLHITNIWYSFAAGIALSVTGFGFSLVYSWYYRKYCSQIIATAAAATVHALYNAIALSLIIVVVAVYLAIDIAKLL