7000000406: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159713063

Overview

Basic Information

• IMG/M Taxon OID: 7000000406
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052951 | Ga0031088
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159713063
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 89347988
• Sequencing Scaffolds: 19
• Novel Protein Genes: 22
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F040149	Metagenome	162	N
F041827	Metagenome	159	Y
F043235	Metagenome	156	N
F043991	Metagenome	155	N
F047508	Metagenome	149	N
F054111	Metagenome	140	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F061927	Metagenome	131	N
F063778	Metagenome	129	Y
F064818	Metagenome	128	N
F074985	Metagenome	119	N
F090517	Metagenome	108	N
F094006	Metagenome	106	Y
F101358	Metagenome	102	Y
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2360782	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	739
C2378979	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	978
SRS024381_LANL_scaffold_10711	All Organisms → cellular organisms → Bacteria	2328
SRS024381_LANL_scaffold_11672	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	858
SRS024381_LANL_scaffold_20904	All Organisms → Viruses → Predicted Viral	2945
SRS024381_LANL_scaffold_29645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1945
SRS024381_LANL_scaffold_31484	All Organisms → cellular organisms → Bacteria	1637
SRS024381_LANL_scaffold_33792	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2109
SRS024381_LANL_scaffold_35377	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1671
SRS024381_LANL_scaffold_45543	All Organisms → Viruses → Predicted Viral	4957
SRS024381_LANL_scaffold_47123	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	515
SRS024381_LANL_scaffold_47314	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1550
SRS024381_LANL_scaffold_57406	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	9475
SRS024381_LANL_scaffold_57899	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	4849
SRS024381_LANL_scaffold_6847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4083
SRS024381_LANL_scaffold_71051	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	881
SRS024381_LANL_scaffold_71654	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	4241
SRS024381_LANL_scaffold_71727	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	3777
SRS024381_LANL_scaffold_8385	All Organisms → cellular organisms → Bacteria	1520

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2360782	C2360782__gene_149341	F059076	TLTIKNSTSNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQKLE
C2378979	C2378979__gene_154992	F041827	HFLSILALGCLLLSCNRDLENNENNETPAPPKEKLVLLKQLSKGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRSYDYGETNITYQYDNQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRFIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHARSHNDPTYDEYLYEISADRSYIKEE
SRS024381_LANL_scaffold_10711	SRS024381_LANL_scaffold_10711__gene_10820	F101358	MTEKYSASLSPRQEHLLTQPITTDGTPKERAIHPDTHIIPKRQDAPHHQWNVLRSSGQLDKGWIDIEIIDENDVALVRMTKPVHRSNIDKLEKCVPLAVLQEQNIDFTNAYLQKAYGVMVKDGRLQPATDTTCDYQQPRATNR
SRS024381_LANL_scaffold_11672	SRS024381_LANL_scaffold_11672__gene_11896	F018385	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGCCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYHEEVK
SRS024381_LANL_scaffold_20904	SRS024381_LANL_scaffold_20904__gene_22465	F074985	MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYDVDTENAVLFTINTCPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTEEIKDLENIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID
SRS024381_LANL_scaffold_20904	SRS024381_LANL_scaffold_20904__gene_22466	F036281	MFSIIRVSEGPVDIYELRMRYLAKLKETDGVMLPTFIYRNKSLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYDAQEYFDYWTAREGKPAPFFYESRQYHVKSFMRVPGSSDLWITAERETGHWYTFRMSDAQKSKFTRHTMTNAKGHQSYDWVLENVEWAADTIRYF
SRS024381_LANL_scaffold_20904	SRS024381_LANL_scaffold_20904__gene_22467	F027205	VASRLIVSADDILKAVKDSEEFEKKALSEARKRDRAEGKPPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEQDLFAFMDYLLDEYDIPKRIRK
SRS024381_LANL_scaffold_29645	SRS024381_LANL_scaffold_29645__gene_33437	F063778	LMPETISEEAKQELLRHLQDALGLVKNADTSAQDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAIGNIEAIPLDPPPED
SRS024381_LANL_scaffold_31484	SRS024381_LANL_scaffold_31484__gene_35659	F061925	MSWEYSLNLDSEESASLVVMDLKFCKLFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHDYHLNDCDTDEEVTLEHIFHSVI
SRS024381_LANL_scaffold_33792	SRS024381_LANL_scaffold_33792__gene_38586	F061927	MKNSIFILSAMFILGACSSDSAQKVTEKIKNTYSDGLRKTFIEEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE
SRS024381_LANL_scaffold_35377	SRS024381_LANL_scaffold_35377__gene_40723	F064818	MNKDEFLKELIAFIADNSSELHPKVFKNKIWFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK
SRS024381_LANL_scaffold_45543	SRS024381_LANL_scaffold_45543__gene_54559	F043991	MSKKNPSVVDYFDLNGDLNEEAYEFEDVKLEDYIDKRSNIKPSWIGKYSQQMHFDLDDGTEVSFYKGRNLIYSDILFSGGIRTTLFKCRQKKNLTRFISRVLELAQGESSNIHPDFRA
SRS024381_LANL_scaffold_47123	SRS024381_LANL_scaffold_47123__gene_56818	F101359	KRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK
SRS024381_LANL_scaffold_47314	SRS024381_LANL_scaffold_47314__gene_57087	F059076	MTNRILLLGLLLGGVSINAQTINETNAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNVDSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYKGLPIHNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYSFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTKNGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQPEGIGPNNTTYTTQLQNFLQKLE
SRS024381_LANL_scaffold_57406	SRS024381_LANL_scaffold_57406__gene_71422	F040149	VADEGAKELRWEVLIEEQGIPVLFIEVEAWYDRWVSSSEILGSVGIALEREPRLAPIWSHDSEDAIDYFIYDVLVPEGHALTAVRERETVVAQLLNIHRYVYYP
SRS024381_LANL_scaffold_57899	SRS024381_LANL_scaffold_57899__gene_72157	F043235	MDEFGTQLTDALLDRPDRSKRELHQWAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIEISGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSTH
SRS024381_LANL_scaffold_6847	SRS024381_LANL_scaffold_6847__gene_6694	F018385	MAEYVNRWDPYSELSIEKDRDPVLDDHLIYGTNVEHYTLTVYSPEGRVSKYWNARILKDDLGRCRIACPRDGKILCFSWFDWDAHMFMHDGINELVFAPKLNSKSPQSLWNKKEVK
SRS024381_LANL_scaffold_6847	SRS024381_LANL_scaffold_6847__gene_6698	F043991	MGKKKPSAVDGFDLNGNVIEEANEFDGVLIEEWVNQRSPLKPSWVGRYSDQMHFDLKDGTEVSFYKRPEIVYGDILFAEGVRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA
SRS024381_LANL_scaffold_71051	SRS024381_LANL_scaffold_71051__gene_96561	F090517	MNRRIFSFCGLLLGLLFLASSCKNKKDTPRLQLSSVELRQTVWNGTWESKNAKRDSYSVYLNFLSDSEVEVSGYDLKDPTYSRDLQVRYYYTITDRILTLKAQVNRELRPPMDQNTWYLIRKEPSLLVFQANAGNPDLEATLTLRKKL
SRS024381_LANL_scaffold_71654	SRS024381_LANL_scaffold_71654__gene_98563	F047508	MLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYASCVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS024381_LANL_scaffold_71727	SRS024381_LANL_scaffold_71727__gene_98860	F094006	MWSALEPAGPTGALYEPAVCVEAHIGYLQAGGIAHRGLFAFGGSNLLAVAELGAEAPHAIDMYDIALCKPLSELFAEELEYAFNFGA
SRS024381_LANL_scaffold_8385	SRS024381_LANL_scaffold_8385__gene_8416	F054111	MVFKNLEKENMNKPLDNITHEVFLKLIEHLKNLKEFTFLEYIMAPEADIFYFNFMEKTMKIKWDLDYGLFLETEALSTADRDLFLNILNKEILFLI