7000000404: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158499257

Overview

Basic Information

• IMG/M Taxon OID: 7000000404
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052949 | Ga0031003
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158499257
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 103832853
• Sequencing Scaffolds: 17
• Novel Protein Genes: 18
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F049707	Metagenome	146	N
F051212	Metagenome	144	N
F055792	Metagenome	138	N
F059076	Metagenome	134	N
F071329	Metagenome	122	N
F081510	Metagenome	114	N
F084342	Metagenome	112	N
F090517	Metagenome	108	N
F095632	Metagenome	105	N
F101358	Metagenome	102	Y
F101360	Metagenome	102	N
F103434	Metagenome	101	N
F105377	Metagenome	100	Y
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C4306431	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae	588
C4327708	Not Available	685
C4336123	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	735
C4341361	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	773
C4344126	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	795
C4394123	All Organisms → Viruses → Predicted Viral	3779
C4395683	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	10695
SRS011152_Baylor_scaffold_1572	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	33691
SRS011152_Baylor_scaffold_21246	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1455
SRS011152_Baylor_scaffold_22504	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	669
SRS011152_Baylor_scaffold_25123	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1513
SRS011152_Baylor_scaffold_3400	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10817
SRS011152_Baylor_scaffold_39918	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1165
SRS011152_Baylor_scaffold_42322	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	11253
SRS011152_Baylor_scaffold_4240	Not Available	956
SRS011152_Baylor_scaffold_52187	All Organisms → Viruses → Predicted Viral	2668
SRS011152_Baylor_scaffold_55938	All Organisms → Viruses	1690

Sequences

Scaffold ID	Protein ID	Family	Sequence
C4306431	C4306431__gene_151577	F084342	PTQCGAKLFLLGGYLAIPIRRPFFAQALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE
C4327708	C4327708__gene_161900	F055792	RERLHRTSYAFTLSLFVERQSMEIASQALDSTSAVTHRILLLTTQLSESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLESRIIGKAIEPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL
C4336123	C4336123__gene_166232	F059076	NTTIPTRTLTIKNAAADKGKPVLRLVDAPIYSKNVGSAMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVSKRDAVNFTELNFNQGGSPEGVGNSNTTYATQLQNFLKTLE
C4341361	C4341361__gene_168981	F101358	QPEHLLTQPITTDGMPQERTTHPDTHIIPKRQDVPRYQWNVLRSSGQLDEGWIDTEIIDENDVALVRMTKPVHRSNIDKLEKCVPLAVLQEQNIDFTNAYLQKAYGVMIKDGRLQPVADTTHATTSSQEQQTEVLLAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNSPLVERVLGHVE
C4344126	C4344126__gene_170494	F090517	MNRRILSFCGLLLGLLFLASSCKNKKDTPRLELSSVELRQTVWNGTLEYKNAKRGSYSVYLNFLSGSEVEVSAYDSKDPTDSYAVQADCFYTITDRIFTLKIQGDRELHPSMDQNAWYLIRKEPSLLVFLANAGNPDREATLTLRKKL
C4394123	C4394123__gene_204183	F101360	VSKENALRRAAIAAHVAKVASQEKKKALKELEEYMAPGDTSKPMIDGLQVGTVSVSAPQPHYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISTTQEEAIRELISTGDISLIEIEGGDA
C4395683	C4395683__gene_206868	F105380	MSILELDSSQYVKQGRIFKKFDSALLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGGRLVYNRLCKGRMMDDIGTDDYEAWKRSPVNRASNFVNKFISARGNSDLDFISNPIRSNVANNIKGYAEFLASITKEQENVNTYEEFIEWTKNTNWLK
SRS011152_Baylor_scaffold_1572	SRS011152_Baylor_scaffold_1572__gene_1336	F081510	MKLPKLPNIQTIKSTAKSAMVTTKILGKKYAPVVLLGVGLVGYGYSVYAGIKSGKNLEATKAKYEAKDVAGEEYTRFEVVKDVAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMVTEEHARYRLRAKEVLDEATFKKIDAPMETKTVELDGKEVEVESIVPNEGDFYGQWFKYSSNYASDNPDYNESYIKEADKYLTDRMMKKGVLTFGEVLEELGFDVPRAALPFGWTDTDSFYIEWDAHEVFDEEKQEYDLQYYVRWKTPRNLYATTSIKDFVPKKTRKELN
SRS011152_Baylor_scaffold_21246	SRS011152_Baylor_scaffold_21246__gene_18562	F059076	MTNKILLLGLLLGGVSINAQNINETNAAGKTKQKVGINTTIPTRTLTIKNAAADKGKPVLRLVDAPIYSKNVGSAMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTIDKVNGDYIRKFDTGIDYDKYAVAIMSATFKMPDPSAGKMVMMRAGNAVIPSVDFGGGKYGVTTAPATILLNKTQLTNNWEIHADYPNIGPYEFPSGSTSSTDLNLVNGKWIITLLVGKKEAVNFTELNFNQGGSAEGVGFSNPTYKTGLENFLKKLE
SRS011152_Baylor_scaffold_22504	SRS011152_Baylor_scaffold_22504__gene_19689	F018385	METMMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGS
SRS011152_Baylor_scaffold_25123	SRS011152_Baylor_scaffold_25123__gene_22258	F049707	VSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAKYDESGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMRPSLYDIERKEN
SRS011152_Baylor_scaffold_3400	SRS011152_Baylor_scaffold_3400__gene_2997	F071329	MLPVAKIILSGLTSIGAGMIASKLTKPLVSNSNGIAKILLWFGSVGTGIAASAIVAREVENQFEETVAAVKEARSHVEIED
SRS011152_Baylor_scaffold_3400	SRS011152_Baylor_scaffold_3400__gene_2998	F018385	MAENKWDSYLEGSIDKDRDPALDDEIIYGVNVKHFNLTVYHPNGRVKKYWNARILKDYLGYCRIACPRDDKILSFNWFNWTAYMFTQSGMNELVFMPHSRRGIVSQLSQGN
SRS011152_Baylor_scaffold_39918	SRS011152_Baylor_scaffold_39918__gene_37323	F051212	IFMKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYHLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSQLNNHLNLEK
SRS011152_Baylor_scaffold_42322	SRS011152_Baylor_scaffold_42322__gene_40028	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSIQTPQTN
SRS011152_Baylor_scaffold_4240	SRS011152_Baylor_scaffold_4240__gene_3733	F022002	EARAIIQRQGGKIILEVGVQAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFEYEGHVRIDHAYIAYTDKELDRARSAEKESEN
SRS011152_Baylor_scaffold_52187	SRS011152_Baylor_scaffold_52187__gene_51679	F103434	VVGFRPRRGRYLENGPHVVEVTLAVVKEGRTGRRFERGETFVIDKVLVQPSAGNALKATENRVIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPDALVGKTFQQAGEPLTYDASPMTHHFSVRCDTLGTESR
SRS011152_Baylor_scaffold_55938	SRS011152_Baylor_scaffold_55938__gene_57576	F105377	MRVRTTVRDFDKLPLLTPEEAFERAWEEGGSAHPVFDRGYRVRGLNDWKAIETLLRQNDVPDITVASFGLKRFEEIFDVFAMLSERGWHLWQTAANVYVGGERKTVQAIRAHYRGD