7000000371: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159814214

Overview

Basic Information

• IMG/M Taxon OID: 7000000371
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052915 | Ga0031110
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159814214
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 160670242
• Sequencing Scaffolds: 15
• Novel Protein Genes: 16
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
Not Available	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F047508	Metagenome	149	N
F049707	Metagenome	146	N
F059076	Metagenome	134	N
F061926	Metagenome	131	N
F063777	Metagenome	129	N
F066860	Metagenome	126	N
F070224	Metagenome	123	N
F076191	Metagenome	118	N
F084342	Metagenome	112	N
F095630	Metagenome	105	N
F095633	Metagenome	105	N
F098763	Metagenome	103	N
F103430	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C5265137	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	509
C5350498	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	750
C5365858	Not Available	834
C5409075	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1366
C5437434	Not Available	4557
C5438062	Not Available	5076
C5439780	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8618
SRS047113_LANL_scaffold_10605	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1739
SRS047113_LANL_scaffold_36912	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	828
SRS047113_LANL_scaffold_50007	All Organisms → Viruses → Predicted Viral	1366
SRS047113_LANL_scaffold_56391	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1568
SRS047113_LANL_scaffold_57537	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1525
SRS047113_LANL_scaffold_62461	All Organisms → Viruses → Predicted Viral	1936
SRS047113_LANL_scaffold_8067	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	539
SRS047113_LANL_scaffold_8709	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	546

Sequences

Scaffold ID	Protein ID	Family	Sequence
C5265137	C5265137__gene_204702	F098763	MDRRASLHILSPALYLATKLFEAVVWATISYDSSDEVEGKGGMNAVPTAVDE
C5350498	C5350498__gene_246626	F095633	MGNYENSTEVWRREGLTEGELRTMGALAVEATEKLRKTTVRKETVLLWSIPFGSWDEFAKSVQEMAAHKMTAYSYEPIPVKINTKRLIATAFLDDRGEISVKERSVPEEVFIDLSRTKCVVDADRSHKSYKFTCPVLKKYPSGELYPIREAYVISVIDANGSQEVDFKIIQGGLN
C5365858	C5365858__gene_254965	F103430	MIEQITIKAFIGSDNKTKKLEVDKIISIVNANHEAFTLDYPVVGYWRGEAEETAVLYLSDERQKVINTLSELKEVLDQEAIAYQIENDLQLI
C5409075	C5409075__gene_281300	F095630	MIYSSLYKTVENNGLIAHIYEHLLAQYVMKYLQSRGFFISSDIILTAKTYGDTCFIDAELYNPEAQDAYNEALRLFDKWDIPGSAALRAAAECGIEMNRAVTELVQDELLHKLSVVQSSAWRQQSDITYRQADGKSSVNTLFHAPYIKYGLESKNLFPEYVLEYSVDEKYIQSPIDQALAAVVMQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKCEFMEYVQFLSASSFCNNLQAALVRCSHNYEQVLLDRDTLNSILGGCVIGSKGWLKMADNTLIGQILKAIEIDVYDI
C5437434	C5437434__gene_306772	F103430	MKLITIKAFIGSDNQTKQLNVDTIVSIVNTNHEAFTLQYPVIGYWRGEAEETAVLYLSDERQKVMSTLNELKEGLNQEAIAYQIENDLQLI
C5438062	C5438062__gene_307768	F070224	MRRLLFLLLTLLHCTAWSQVYNAPDSIYIIRSDIYIPPVSGEPIYLLASPLKSGHTPGNKLRTRDWVKVDYSDQNNIIIINVGDPLVIENFFAYYAAGFPKMKEYKLYYKGTGEEITKEDFDSIKFSRMPTALREIKKYKLSRTRRSSGEVDRWQHPHLFVVEHDKKADRYYKYRIALVIYMDYDHPEACIIH
C5438062	C5438062__gene_307769	F070224	MKRLLFLLLTLLHYTAWSQVYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNAGDPLVIENFFAYYAAEFPKMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLREVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEAHMIH
C5439780	C5439780__gene_310769	F049707	MGNYLPRSSVVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTIWYFRLVDGGIMTFSAREWEQKDDVNHLTTIWMRPSLYDIERKTS
SRS047113_LANL_scaffold_10605	SRS047113_LANL_scaffold_10605__gene_9182	F040149	PRVADEGAEELRGEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALERETRLAPVWSHDSKDAIHDFIYDTSIPKGHTLTAVRERETVVAQLLNIHRYVYYP
SRS047113_LANL_scaffold_36912	SRS047113_LANL_scaffold_36912__gene_34221	F059076	LLGLLLGGISTNAQVINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNVDSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMNILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQKLE
SRS047113_LANL_scaffold_50007	SRS047113_LANL_scaffold_50007__gene_48080	F047508	GHRLVEGRVKYPYLRDIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFKNVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS047113_LANL_scaffold_56391	SRS047113_LANL_scaffold_56391__gene_55309	F066860	MTTKKQKLQKQQTIDRWIVIALWASAIWFSLARGFITGVGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTFGIAEDREETTEDVAI
SRS047113_LANL_scaffold_57537	SRS047113_LANL_scaffold_57537__gene_56583	F084342	VPTQCGAKLFLLGSYLAIPICRPFFAKAPKETLGQERSLGDAYDKDYQNEKALQWIHRCHILGICKEE
SRS047113_LANL_scaffold_62461	SRS047113_LANL_scaffold_62461__gene_62207	F076191	MKIIAENPAEEALLRRIKALSDELVNQDNQCTNMPVWTILDNGKADKDYGAVMYFTGKAAEQHIEENIHYYDNPTIYIRSAHDNRELKDVIHLLILAGGNEIPSNHYGFLRNA
SRS047113_LANL_scaffold_8067	SRS047113_LANL_scaffold_8067__gene_6942	F061926	MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECNDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIF
SRS047113_LANL_scaffold_8709	SRS047113_LANL_scaffold_8709__gene_7526	F063777	IGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFNDFCAKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQEDIGDYILLQNLILEDNQLKNQLISFNKNTGKITVLANIKDFFWLDFDSETKTINSYNNKEQIEIATSE