7000000274: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 737052003

Overview

Basic Information

• IMG/M Taxon OID: 7000000274
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052792 | Ga0031101
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 737052003
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 104028754
• Sequencing Scaffolds: 19
• Novel Protein Genes: 21
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F040149	Metagenome	162	N
F042387	Metagenome	158	N
F045567	Metagenome	152	N
F051214	Metagenome	144	N
F054109	Metagenome	140	N
F055792	Metagenome	138	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F063778	Metagenome	129	Y
F064818	Metagenome	128	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F085821	Metagenome	111	N
F090517	Metagenome	108	N
F092231	Metagenome	107	Y
F094006	Metagenome	106	Y
F101359	Metagenome	102	N
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2287030	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	631
C2293635	Not Available	666
C2297566	Not Available	689
C2327917	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	972
C2331387	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1024
C2352892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1665
C2353330	All Organisms → Viruses → Predicted Viral	1688
C2357772	All Organisms → Viruses → Predicted Viral	2009
C2360404	All Organisms → Viruses → Predicted Viral	2273
SRS052876_LANL_scaffold_15837	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	11447
SRS052876_LANL_scaffold_19756	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1153
SRS052876_LANL_scaffold_32520	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1039
SRS052876_LANL_scaffold_34278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1961
SRS052876_LANL_scaffold_39350	All Organisms → cellular organisms → Bacteria	5670
SRS052876_LANL_scaffold_40561	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	4883
SRS052876_LANL_scaffold_47415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1940
SRS052876_LANL_scaffold_51901	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1209
SRS052876_LANL_scaffold_55394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	1063
SRS052876_LANL_scaffold_8508	All Organisms → cellular organisms → Bacteria	3300

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2287030	C2287030__gene_148742	F018385	METTMAEYVNQWESYKELSIEKDRDPVLDDEIIYGSNVKHFTLTVYSPEGRVNKYWNARILKDQVGNCRIACPREGKILCFNWFNWTAYMFIHDGMNELVFMPDSRRRVVSQLSLDNSGKKEVK
C2293635	C2293635__gene_151441	F085821	MNHIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKQFLNWVFMEPIYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYINAWNEASVNKTLSIIRSGETIASRKEDVVELAESLNDEYELNISLLDEYCRALLCTAETTESQQELVAEIQSHI
C2297566	C2297566__gene_153003	F085821	MSNIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFIAGNMPAVQLCIDYLVAQAYPTAENKKKFLNWVFMELVYYLKYFISDASTQKKLHHDLLNLWYESNKRLLLEQDKGKHDEAYINAWNEANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNVNLLDEYCRALLYTAETTESQQELVAETQSHIALLKDLYK
C2327917	C2327917__gene_165254	F042387	FLVSCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGEKVVFVYEKDFITSKIRYSQAGKELGKTNYEYNNGKLSSVIDEAVISDSGIQNKRVVTREYRYNGSEVSVNENVKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDTKNSPYKNIKGFSALATEFCSLDKDENTIADYLNYRWVSHNPTLIKKSINLYGSGVDSSEYKFQYEYKNNFPIKMKLNIDNQTITTMVYEYNK
C2331387	C2331387__gene_166710	F059076	MTNRILLLGLLLGGASINAQTINETNAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNVDSDMDADLGGNTATTTNYTDYRPLVVDKIGDVYQGLPINNMSILTLTIDNVEGDWISSFDTGINYDKYAVAIMSAFFKLPAKSGNNLVMLTGNSGVPNATNGSSTSARIAPPTVILKKDGNNWAIEADYDNMSPEKFTKNLTSRGVSSNVNGSWVISLLVGRRDAINFTELNFNQSGLSTGKGTNNTTYATQLQNFLQKLE
C2352892	C2352892__gene_176655	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQVAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDDKLKETE
C2353330	C2353330__gene_176876	F051214	MPGKIVPHETHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNTTDLIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPVYIYNNREYQIACEFLRQIMHDKIDLKKEWL
C2353330	C2353330__gene_176877	F071329	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVAAVKEARDHIEIED
C2357772	C2357772__gene_179213	F027205	MRAVKESEEFERKALVEAQKRDRAAGKKPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIRK
C2360404	C2360404__gene_180786	F054109	MTGRPKSKRGVKVHTAFKIYPEDKARAQAMSEKLDMSLSSYINKAVLEKLMRDEKSED
SRS052876_LANL_scaffold_15837	SRS052876_LANL_scaffold_15837__gene_17870	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALKRDLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKAIEAVALPHVARLDEGIPLQRIGSLRDLLVTPDVSQADDL
SRS052876_LANL_scaffold_15837	SRS052876_LANL_scaffold_15837__gene_17871	F040149	VADEGAKEFRWKVLIKEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPRLAPVWRHDSEDAIDYFIYDVFVPKGHTLTAVRERETVVVQLLNIHRMF
SRS052876_LANL_scaffold_19756	SRS052876_LANL_scaffold_19756__gene_22635	F061925	MGWEYSINLDSEESVSSVVKDLKNCELFSSSTTDYIDWKKPKSIDSIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHNHYLTDCDTDKEVTLEHIFRSVI
SRS052876_LANL_scaffold_32520	SRS052876_LANL_scaffold_32520__gene_38327	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGTRVQNWSTNFTSYTGKGITDSYKETVK
SRS052876_LANL_scaffold_34278	SRS052876_LANL_scaffold_34278__gene_40681	F063778	MPETISEEAKQELLQKLQDALGLVADADTSAHDVAAITQSAADGHQLTEVMLQQMTAIEAYLKNYQVSINDAIGNIEAIPLDPPPDD
SRS052876_LANL_scaffold_39350	SRS052876_LANL_scaffold_39350__gene_47725	F094006	MWSALEPAGPTGALHEPAVSMEAHIGELQAGCIAHRGLFAFGRRNVLAVAELGAEAPHAIDMYDIALCKPLSELFAEELEYAFNFGA
SRS052876_LANL_scaffold_40561	SRS052876_LANL_scaffold_40561__gene_49404	F045567	VRQRDGRDTLTEELEGGIIPLLYRAEGEARRPWVRMVTEDVVHTGTHRVEDALLPIDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTGIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSESGCVVERVVR
SRS052876_LANL_scaffold_47415	SRS052876_LANL_scaffold_47415__gene_59141	F103431	MIDLDALIVGMLFFIQLFLQSIAWRVAIAHFLHTERGNAAAAAFDGAFRENIADCHAEDDNDKDAESQKEGFHVCIPEG
SRS052876_LANL_scaffold_51901	SRS052876_LANL_scaffold_51901__gene_66704	F090517	LGLLFLASSCKNKKDTPRLELSSVELRQTVWNGTLEYKNAKRGSYSVYLNFLSDSEVEVSAYDSKDPTASYIVQADCFYTITDRIFTLKTQGDRELHPSMDQNAWYLIRKEPSLLVFQANAGNPDREATLTLRKKL
SRS052876_LANL_scaffold_55394	SRS052876_LANL_scaffold_55394__gene_73754	F092231	MIIFPPQEFITWANMLVQFPWPIQLNDFPPYAERLAWKATLRSTWFNVLPGNDNKFAMLGSNKEGNVYNLYLHMAMNEADDVEGAVELNDHLVSCVAAGRKEWGEPFLLEAGDDPTATWRFPGDMFAQVTGGFTAVLFQFFTPEGRWYFL
SRS052876_LANL_scaffold_8508	SRS052876_LANL_scaffold_8508__gene_9413	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFTQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK