7000000253: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 160158126

Overview

Basic Information

• IMG/M Taxon OID: 7000000253
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052771 | Ga0028006
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 160158126
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 32142083
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F051213	Metagenome	144	N
F094006	Metagenome	106	Y
F098763	Metagenome	103	N
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS054569_LANL_scaffold_12055	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	4066
SRS054569_LANL_scaffold_18396	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	4437
SRS054569_LANL_scaffold_19390	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	5569
SRS054569_LANL_scaffold_20199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	2147
SRS054569_LANL_scaffold_25570	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2924

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1505801	C1505801__gene_59712	F040149	VADEGAKELRWEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPRLAPVWSHDSKDAIHDFIYDTSVPKGH
SRS054569_LANL_scaffold_12055	SRS054569_LANL_scaffold_12055__gene_11590	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTRKIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS054569_LANL_scaffold_18396	SRS054569_LANL_scaffold_18396__gene_19397	F094006	MRGALEPADPTGTLYESVVSVEAYIGELQAGGISRRDLFALGWSNVLAVAELGAEASHAIDMYDIAVCEPLSELFTEELEYAFNFSA
SRS054569_LANL_scaffold_19390	SRS054569_LANL_scaffold_19390__gene_20624	F051213	MKASKLLWAVVVALTLVFTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK
SRS054569_LANL_scaffold_20199	SRS054569_LANL_scaffold_20199__gene_21698	F103431	MIDLDALIVGMLFFIQLFLQGIAWCVAIAHFLHAERGNAAAAAFDGAFRENIADCHTEDDNDKNAESKEEGFHVCIPEG
SRS054569_LANL_scaffold_25570	SRS054569_LANL_scaffold_25570__gene_29855	F098763	MDRRASLRVLSTALHLAPKLFEAVIWATIADDSSDEVEGKGRMNTIPTAVDEQTLGVL