Sample 7000000208

Basic Information
IMG/M Taxon OID	7000000208 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052720 \| Ga0031002
Sample Name	Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158479027
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

7000000208 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0052720 | Ga0031002

Sample Name

Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158479027

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	148936373
Sequencing Scaffolds	20
Novel Protein Genes	21
Associated Families	19

Dataset Contents

Total Genome Size

148936373

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → Viruses → Predicted Viral	4

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas

All Organisms → Viruses

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales

All Organisms → Viruses → Predicted Viral

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F027205	Metagenome	195	N
F040149	Metagenome	162	N
F042387	Metagenome	158	N
F043235	Metagenome	156	N
F051211	Metagenome	144	N
F051213	Metagenome	144	N
F051214	Metagenome	144	N
F070224	Metagenome	123	N
F074985	Metagenome	119	N
F077403	Metagenome	117	N
F077405	Metagenome	117	N
F081456	Metagenome	114	N
F084362	Metagenome	112	N
F085821	Metagenome	111	N
F090517	Metagenome	108	N
F097490	Metagenome	104	N
F097525	Metagenome	104	N
F105377	Metagenome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
C4564359	Not Available	554	Open in IMG/M
C4566355	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
C4569529	Not Available	566	Open in IMG/M
C4577647	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	587	Open in IMG/M
C4595563	Not Available	641	Open in IMG/M
C4647199	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	918	Open in IMG/M
C4648503	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	929	Open in IMG/M
C4650015	Not Available	942	Open in IMG/M
C4657171	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1016	Open in IMG/M
C4704295	All Organisms → Viruses	5396	Open in IMG/M
SRS011126_Baylor_scaffold_17227	Not Available	538	Open in IMG/M
SRS011126_Baylor_scaffold_21393	All Organisms → cellular organisms → Bacteria	8220	Open in IMG/M
SRS011126_Baylor_scaffold_54139	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	740	Open in IMG/M
SRS011126_Baylor_scaffold_59755	All Organisms → Viruses → Predicted Viral	1966	Open in IMG/M
SRS011126_Baylor_scaffold_66706	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1663	Open in IMG/M
SRS011126_Baylor_scaffold_72190	Not Available	8864	Open in IMG/M
SRS011126_Baylor_scaffold_73376	All Organisms → Viruses → Predicted Viral	2806	Open in IMG/M
SRS011126_Baylor_scaffold_73721	All Organisms → Viruses → Predicted Viral	2745	Open in IMG/M
SRS011126_Baylor_scaffold_74817	All Organisms → Viruses → Predicted Viral	1399	Open in IMG/M
SRS011126_Baylor_scaffold_76321	Not Available	836	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C4564359	C4564359__gene_201742	F022002	ALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGIHAGSKDVSYIVSGLNYARRPTQTVDMFFYKGHLRRIYFSFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKESEN
C4566355	C4566355__gene_202600	F040149	IPVLFVEVEAWYDGRVSSSEILGSVGIALEREPRLAPVWSHDSKDAIDYFIYDTSVPKGHALTAVRERETVVAQLLNIHRMF
C4569529	C4569529__gene_203969	F070224	GDPISLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNAGDPLVIENFFAYYAAEFPKMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLREVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEAYTVH
C4577647	C4577647__gene_207581	F097490	LLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTEKNYYLLSPVVSAMADHGLNHVTSEMIEGQMYYKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKTIKYKYNNEKEYKIDEFYTVFPYNGYSNEIGKKMHFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C4595563	C4595563__gene_215470	F022002	YAQDGQSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIIAEEGAQNGGDDGGYAFTGFKYARRPTSLITLHFYKGHLRKIAFVFDKLDVLEQIESELENKYGMMAEGKETSKMKSKVIFDAFTFLEVVRRFEYEGHVGFDHAYIAYTDAELDRARLAEKESEI
C4647199	C4647199__gene_240001	F043235	SLCGGLGIVTRYPEGAIALFIGLAHRDQCDIYRIDTIPKEVWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKIQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
C4648503	C4648503__gene_240679	F042387	SRENDKMTDETLANNAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGNGDKVVFVYEKNFITSKIRYSQAGEELGKTNYQYSNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSGVSVNENVKYYSESYAYNLRDENSTHTYVLNGENITKIHHEISKNVPSGHSYLNPNNMVVIDEEVAYDAKNSPYKNIKGFSALATEFCGLDKDENTIADYLNYRWVSHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQTITTMVYEYNK
C4650015	C4650015__gene_241427	F077403	MKITMPIYRGLPLAILLLSAMSAIYAEERISVHFEVRWRREHNLMDTLRRELDVPYLHVVYQNRTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSERAYYLQGYLYYLMNPQQAHDWYQVSYLPDHATHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGSALPDHYEGYQLYRGQVRGDS
C4657171	C4657171__gene_245095	F051213	MNLYKILGALILALSFVFTSCDWVGNEPTIEGDHFKYFDSSAQRKSFRVVNASGKRYNHKVDWHIIGITQLDSKTYFTKKVDTLPNGDLKISYDWVSFTVKERKSVIEVEVQKNETGQDRSVFFATSNSRYQAHLPDIIVVQRAK
C4704295	C4704295__gene_276385	F105377	VRAEMRDFDKLPLLTPEEAFERAMEMGWNRPLFDHGYRVRGLNDWRAIETLLRQYDVEDAVIASFGLKRFEEIFDAFAMMSERGWRLWQTSANAYVDGELRTVPAIGAHYRGL
SRS011126_Baylor_scaffold_17227	SRS011126_Baylor_scaffold_17227__gene_20158	F077405	PTELFPRLLVAKQRGVFYGFILLCQIKFVKKFFDWLKIIQK
SRS011126_Baylor_scaffold_21393	SRS011126_Baylor_scaffold_21393__gene_24961	F051211	MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSNTATMASLKHLRVYRPHSLHERILSRLR
SRS011126_Baylor_scaffold_54139	SRS011126_Baylor_scaffold_54139__gene_64207	F097525	MQQKKIMFKLQNAHQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIGFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASF
SRS011126_Baylor_scaffold_59755	SRS011126_Baylor_scaffold_59755__gene_71190	F074985	VELTDGGWYNTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMNKIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID
SRS011126_Baylor_scaffold_59755	SRS011126_Baylor_scaffold_59755__gene_71192	F027205	RTHVASRLIVSADDILKAVKESEAFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK
SRS011126_Baylor_scaffold_66706	SRS011126_Baylor_scaffold_66706__gene_80889	F090517	LQLSSVELRQTVWNGTLEYKNAKRGSYSVYLNFLSDSEVEVSAYDSKDPTASYIVQADCFYTITDRIFTLKTQGDRELHPSMDQNAWYLIRKEPSLLVFQANAGNPDREATLTLRKKL
SRS011126_Baylor_scaffold_72190	SRS011126_Baylor_scaffold_72190__gene_90173	F084362	MNCTFTVRWSDENNKPHSKTYATEADARKAKQWLLERGVRDVDIAVRINNKPAGGLQNDEKKSESTAEQKGFWWEK
SRS011126_Baylor_scaffold_73376	SRS011126_Baylor_scaffold_73376__gene_92451	F081456	PTWGIGFSRARKEHKMFEEPPIYYILISLIFLIVFGAISFATWLVWLTPVSFMAKLVMTAIGFLLCAITVILYTISAD
SRS011126_Baylor_scaffold_73721	SRS011126_Baylor_scaffold_73721__gene_93153	F027205	RTHVASRLIVSADDIMRAVKESEEFERKALAEARKRDRAEGKPPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK
SRS011126_Baylor_scaffold_74817	SRS011126_Baylor_scaffold_74817__gene_95398	F051214	AFLKGAHMPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIIHDKIDLKNEWIA
SRS011126_Baylor_scaffold_76321	SRS011126_Baylor_scaffold_76321__gene_98869	F085821	MNHIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYVVAQGYPTAENEKQFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNIGLLDEYCRALLYTAETTESQQELVAETQSHIAL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000208: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158479027

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences