7000000207: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158742018

Overview

Basic Information

• IMG/M Taxon OID: 7000000207
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052719 | Ga0031230
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158742018
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 55616492
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043235	Metagenome	156	N
F043990	Metagenome	155	N
F045567	Metagenome	152	N
F047127	Metagenome	150	N
F051213	Metagenome	144	N
F055792	Metagenome	138	N
F061925	Metagenome	131	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F090517	Metagenome	108	N
F094006	Metagenome	106	Y
F099454	Metagenome	103	N
F105376	Metagenome	100	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2021761	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	560
C2025341	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	586
C2029464	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	622
C2037845	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	721
C2048465	Not Available	959
SRS011243_Baylor_scaffold_14022	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1170
SRS011243_Baylor_scaffold_17585	Not Available	3988
SRS011243_Baylor_scaffold_27445	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2801
SRS011243_Baylor_scaffold_27822	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2283
SRS011243_Baylor_scaffold_39401	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	919
SRS011243_Baylor_scaffold_40114	All Organisms → Viruses → Predicted Viral	1415
SRS011243_Baylor_scaffold_42417	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	992
SRS011243_Baylor_scaffold_46151	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	916
SRS011243_Baylor_scaffold_48422	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2328
SRS011243_Baylor_scaffold_48527	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	5120

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2021761	C2021761__gene_91204	F063777	IPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEYLDDGYLFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFDKNTGKITVLTDIKDFFWLDFDSETKIINGYNNKEQIEIAISE
C2025341	C2025341__gene_92299	F047127	MKKTFAFILLSIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIINIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK
C2029464	C2029464__gene_93617	F094006	RARVAAMWSALEPAGPTGALYESAVCVEAHIGELQTGGIACRGLFAFGRRDLLAVAELGAEAPHAINMYDIALCKPLSELFGEELEYAFNFGA
C2037845	C2037845__gene_96314	F043990	MIKKLGIIFTIGVVILGIVVYAGHKIEKSWIEGEFGVNTSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDNSFTKLNKLPIKEDLPPNGIPKQFLNIANGYYKYVVDENDDRDFGILIVDTTRKEICIYNQIL
C2048465	C2048465__gene_99681	F105376	MNEKPEVSAKEFGALQAKVEYIKDGVDKHTVMLERIENIARDNVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELKEEVQQTQVRRK
SRS011243_Baylor_scaffold_14022	SRS011243_Baylor_scaffold_14022__gene_15253	F099454	MKASKLLWAVVMALTFVLTSCDRLTDEPTLEDRGYYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK
SRS011243_Baylor_scaffold_17585	SRS011243_Baylor_scaffold_17585__gene_19231	F055792	VEIAGEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCALEEVRPVFVDEGDDGTEAGTTWGRYPLETLQKEGYILFEGSMLPCEACGVDSRSSVKSLDLEPRIIGKAIEPVALPDVTRLDESISLQGIGGLRDLLMTPDVSET
SRS011243_Baylor_scaffold_27445	SRS011243_Baylor_scaffold_27445__gene_31252	F043235	MDEVVPSDEGHLLIDLCDDDPRRLRSGLGIVTRHPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVYSLIQVSGAAILVKEVKDGMYMPYHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLFPGSAH
SRS011243_Baylor_scaffold_27822	SRS011243_Baylor_scaffold_27822__gene_31745	F045567	VRQRDGRDTLTEELEGGITPLLYRAEGEARRPWVGMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQAERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
SRS011243_Baylor_scaffold_39401	SRS011243_Baylor_scaffold_39401__gene_46843	F061925	MSWEYSINLDSEESVSSVVTDLKICELFSSSTTDYIDWKNPKSIDSTPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI
SRS011243_Baylor_scaffold_40114	SRS011243_Baylor_scaffold_40114__gene_47767	F051213	GIKTLMKAYKLLWAVVVALTFVFTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEIQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK
SRS011243_Baylor_scaffold_42417	SRS011243_Baylor_scaffold_42417__gene_50926	F090517	LGLLFLASSCKNKKDTPRLEFSSVELRQTVWNGTLEYKNPKRDSYSVYLNFLSDSEVEVSAYDSKDPTASYIVQADCFYTITDRIFTLKTQGDRELHPSMDQNAWYLIRKEPSLLVFQANAGNPDREATLTLRKKL
SRS011243_Baylor_scaffold_46151	SRS011243_Baylor_scaffold_46151__gene_56914	F064819	MILKDNQGKDRIKFSDIIRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEELTRNLKNLSECKIRKFFFQNIDETIKIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIAIFSKEISQELEKYK
SRS011243_Baylor_scaffold_48422	SRS011243_Baylor_scaffold_48422__gene_61908	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYEGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQATEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK
SRS011243_Baylor_scaffold_48527	SRS011243_Baylor_scaffold_48527__gene_62256	F105380	MTIVELDTSQYVKQGRIFKKFESNLLDSYMDGRQTQYNINLADLDDQISDGIVYADKSGKMIYKFSAKKIVQTAITKDLTISGLADEFKMDYYSFWVPDIYLLSYSGFNPGNGLCLAYRKKYEEYICLTNIFPDRREQENSYFPNGKKLETKSICTGSMMADIDSAEYAAWKNDAVTRASQYVNKFLSARGNADLNFVSSSLRSKVPSHDMKKFAEFLGSITKEQENVNTYEEFIEWTKNTKWLK