7000000195: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159814214

Overview

Basic Information

• IMG/M Taxon OID: 7000000195
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052700 | Ga0031268
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159814214
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 104100037
• Sequencing Scaffolds: 24
• Novel Protein Genes: 26
• Associated Families: 25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	7
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F040685	Metagenome	161	N
F045567	Metagenome	152	N
F046433	Metagenome	151	N
F047508	Metagenome	149	N
F051212	Metagenome	144	N
F051213	Metagenome	144	N
F058221	Metagenome	135	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F066860	Metagenome	126	N
F067846	Metagenome	125	Y
F071328	Metagenome	122	N
F072446	Metagenome	121	N
F073671	Metagenome	120	N
F078842	Metagenome	116	N
F080164	Metagenome	115	N
F081454	Metagenome	114	N
F081510	Metagenome	114	N
F090517	Metagenome	108	N
F092230	Metagenome	107	N
F094007	Metagenome	106	N
F095630	Metagenome	105	N
F099454	Metagenome	103	N
F103432	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2518450	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	512
C2528661	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	549
C2529965	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	554
C2545493	All Organisms → cellular organisms → Bacteria	627
C2567037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	786
C2578312	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	924
C2589078	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1137
C2599988	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1558
C2611008	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	3033
SRS017209_Baylor_scaffold_1252	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	553
SRS017209_Baylor_scaffold_21679	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	982
SRS017209_Baylor_scaffold_22763	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	35086
SRS017209_Baylor_scaffold_24281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4817
SRS017209_Baylor_scaffold_32412	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	6018
SRS017209_Baylor_scaffold_41593	All Organisms → Viruses → Predicted Viral	2857
SRS017209_Baylor_scaffold_44639	All Organisms → cellular organisms → Bacteria	2412
SRS017209_Baylor_scaffold_4653	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	49109
SRS017209_Baylor_scaffold_49350	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	22062
SRS017209_Baylor_scaffold_49799	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1358
SRS017209_Baylor_scaffold_53361	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	510
SRS017209_Baylor_scaffold_58462	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	57021
SRS017209_Baylor_scaffold_59150	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	27944
SRS017209_Baylor_scaffold_69449	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	6161
SRS017209_Baylor_scaffold_7880	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	72976

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2518450	C2518450__gene_150390	F051213	TLMKASKLLWAVVMALTFVLTSCDPFSKNEPTIEGDRYKYFDSSAQRQSFRVVNGSGKQYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK
C2528661	C2528661__gene_153578	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLAPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFG
C2529965	C2529965__gene_154008	F094007	VDYLWILWYNSYYMKSKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAECHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGEAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA
C2545493	C2545493__gene_158990	F047508	MLGHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELI
C2567037	C2567037__gene_165826	F092230	YAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVQNTEEKEAHDKVDEAINSMRHLFASAIIVNLRVVELYKILTVCMILIAIAMTIGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV
C2578312	C2578312__gene_169406	F046433	PVAPPKLLSQAQDASRDNPVTYVVDDGYMGTRTSDPCFRKMRRGTTEYKALNEFLYFMKMVEPYVPDHIKDNARELRNELVFLGMSELHFAATALAKRLRCHLEVDSQYILSLVLSKFPDDEFEEYKGRLKVYDGRGEIDERSKILFLDDWIIGGDQVRERISVFEAYNNPGAHKVSVLVMAASSNYIDNGIGADSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDELSLPALANIVRPYRNGENFDGLSRFRQLLEKE
C2589078	C2589078__gene_172855	F033081	MHTDITVVYRPKKGVMAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRWKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPTRWATATAWTVGMAGVFLMGDLTNYTPSQKILHKIKATRYEVYNTILFLALLEEQAFRSGSERWNWRERVRASVCFGLLHIMNIWYNFATGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL
C2599988	C2599988__gene_176411	F095630	YKTVENNGLLAHIYEHLLAQYVMKALQGRGFFISSDIILTAKTYGDTCFMDVEFYSPEAQDAYNEALRLFDKWDIPRSAALRAATECGIEMNRLVAELAQDELLHELSAVQSSPWRQQSDMTYRKADSKSSVNTLFHAPYIKYGLESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVMQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDSIVHQLKCEFMEYVQFLSASSFCNNLQAALVRCSHSYEQVLLGRDTLNSILGGCVIGSKGWLKMADNTLIGQILKAIEIDVYDI
C2611008	C2611008__gene_180149	F081454	MKVFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMIMNIKYKLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTNQNIDMTINLKLKTEILTLENTSKAKSIITQQKI
SRS017209_Baylor_scaffold_1252	SRS017209_Baylor_scaffold_1252__gene_1699	F090517	LLLGLLFLSSSCKKDTPLPPQLSEGELRQTVWNGTLEYKNPKRDSYSVYLNFLSDSEVEVSGYDLKDPTYSRDLQVRYYYTITDRILTLKAQVNRELRPPMDQNTWYLIRKEPSLLVFQANAGNPDLEATLTLRKKL
SRS017209_Baylor_scaffold_21679	SRS017209_Baylor_scaffold_21679__gene_27528	F078842	YKIADNDGLIAHIYEHLLAQYVLKRLQDNELFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVISEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQLSPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLNKDDKIINQLSCDFLKYIKSLSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLKMADSARIRQMINSIELDIYEVNS
SRS017209_Baylor_scaffold_22763	SRS017209_Baylor_scaffold_22763__gene_28964	F103432	MKLINSLFSFSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHLVSTTAAGLRVREPRRVVPMLPRQLHVTMEGKTLIRRHSLPSVSAYSFQVVAVGDTIYRQKESDAQFNVDLDALFHESIGIAPRLFGVRELSVLGIDSRGKTRDLGNYSYPLLRGVRIYMAFRSREGVFHEHYEAARVDTFCVKDDWLLKTKAEPSLYVPSFRLLVWDQPADDYTKLRFTLTLVDGRSLVAEVPLY
SRS017209_Baylor_scaffold_22763	SRS017209_Baylor_scaffold_22763__gene_28965	F080164	MVGLTLCAAPQVTLRERASAFPLITEKDESEIIAPYAWRLPVVPLSLDNREIRNFAKYPALPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPLLYKGQTGRLVLCEYYGSHRGDLFLDVANARPEIFGELNPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYGEQTSILDHPARS
SRS017209_Baylor_scaffold_24281	SRS017209_Baylor_scaffold_24281__gene_31182	F073671	MEKQQAEHELAELHEKERSLEKALELVREKIRELVNYTDKNKGNNNETKF
SRS017209_Baylor_scaffold_32412	SRS017209_Baylor_scaffold_32412__gene_42441	F061927	MKNSIFILSAMFILGACSSESAKKAYNDSFRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDDRIEKAISSCIGE
SRS017209_Baylor_scaffold_41593	SRS017209_Baylor_scaffold_41593__gene_55430	F067846	MESLQAQWERKTFNDYDRRCCAEDAYNEAIEREIECIEDDISNGDSDAICAFSEKMFDDDEFLKAIALGSDYEEMRIKILTAMAEDRLEQLEEDYRKGYILND
SRS017209_Baylor_scaffold_44639	SRS017209_Baylor_scaffold_44639__gene_59855	F045567	MRQRDGRDTLTEELKGDITPLLYRTEGEARRPWVGMVTEDVVHTSTHRVEDTLLPVDGDILTPRDGTHIVQAERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
SRS017209_Baylor_scaffold_4653	SRS017209_Baylor_scaffold_4653__gene_5713	F081510	MKLPKINTKAIKAGAKTTYNTAKILGKKYAPVVLVTTGLVGYGIAVYQGIKSGKKLEATKAKYEAKDAAGEEYTRMDVVKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTAVTEEHARYRLQCKEVLDEETFKKIDTPMDQVTVEEDGKEAQSFVPKEGLMYGNWFKYSANYASDSPEYNEQWIRESIRVLEEKIARKGLLNFSEMLDQLGFDVPKAALPFGWTDTDGFYIEYDIMEVWNAEEQMHEPQIYVRWKCPRNLYATTNFRDLIPGRKELT
SRS017209_Baylor_scaffold_49350	SRS017209_Baylor_scaffold_49350__gene_67175	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVQLHHQETHQKTEKIAECSNKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
SRS017209_Baylor_scaffold_49799	SRS017209_Baylor_scaffold_49799__gene_67798	F046433	MIELPTSPDALSELSPVAPPKLLLQAQDASRDNLMVYVKADDYLRTETSDPSFMKSRCETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRCHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFIDDWIIGGDQVRERISVFGAYNNPGAHKVSVLVMAASSSYINNGIVADSLWGEVTYPVEAYYGLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG
SRS017209_Baylor_scaffold_53361	SRS017209_Baylor_scaffold_53361__gene_73119	F099454	KASKLLWAVVMALTFVLTSCDRLTDEPTLEDRGYYKYFDSTAQHKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK
SRS017209_Baylor_scaffold_58462	SRS017209_Baylor_scaffold_58462__gene_81450	F072446	MHEFDAQAHKNKFNPPTHPQMKKLVFLLFGLCLYCFTACDSDHEPTKPVRPFHGDTLAQIAWNFPYIVEHHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTLNRHKKELETLARQLHALILPTIGTSPVLCGVKSIKAVGVAENGRTYDLSWEMKLRIRDYSSRRKYNSGRIVTLDCEDTESLTARYVVQLGQIREHELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNKSVLENYQQYGFEREATYFTTLWPVPDYKYNEREW
SRS017209_Baylor_scaffold_59150	SRS017209_Baylor_scaffold_59150__gene_82655	F040685	MKKLLFKLFFTLAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQAFDGQDEVIIIKTDKKTYRKMNASGNDHDRKVWYDLLQIIAKEFGKKSIYE
SRS017209_Baylor_scaffold_59150	SRS017209_Baylor_scaffold_59150__gene_82656	F051212	MKKFFFIFVLYWLHSCNGTEKAMTTSPDTQKTSISEKQNTEKIERIIYSETGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLKDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTDIQNNTTWDYITKQVMDIKYSQLYNHLNLEK
SRS017209_Baylor_scaffold_69449	SRS017209_Baylor_scaffold_69449__gene_103464	F058221	MRNKMGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLEIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI
SRS017209_Baylor_scaffold_7880	SRS017209_Baylor_scaffold_7880__gene_9827	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAICLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDRGINLYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW