7000000126: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763982056

Overview

Basic Information

• IMG/M Taxon OID: 7000000126
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052610 | Ga0031106
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763982056
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 62410203
• Sequencing Scaffolds: 12
• Novel Protein Genes: 17
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
All Organisms → Viruses	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F036281	Metagenome	170	N
F040149	Metagenome	162	N
F043990	Metagenome	155	N
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F051213	Metagenome	144	N
F055792	Metagenome	138	N
F058221	Metagenome	135	N
F067847	Metagenome	125	N
F074985	Metagenome	119	N
F084342	Metagenome	112	N
F085821	Metagenome	111	N
F095632	Metagenome	105	N
F098763	Metagenome	103	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C1755651	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	503
C1781156	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	658
C1787042	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	716
C1818220	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1700
SRS043772_WUGC_scaffold_15598	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena	871
SRS043772_WUGC_scaffold_23996	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	14985
SRS043772_WUGC_scaffold_24027	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	11385
SRS043772_WUGC_scaffold_42294	All Organisms → Viruses	1365
SRS043772_WUGC_scaffold_44140	Not Available	1858
SRS043772_WUGC_scaffold_44286	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2607
SRS043772_WUGC_scaffold_5223	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	33046
SRS043772_WUGC_scaffold_8654	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1755651	C1755651__gene_87494	F058221	KMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLVQNASFLANKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI
C1781156	C1781156__gene_98029	F084342	SGQCGAKLFLLGGYLAIPIRRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE
C1787042	C1787042__gene_100497	F098763	MDRRASLRILSPALYLATKLFEAVVRTTISYDSSDEVEGKGGMNAIPTTVDE
C1818220	C1818220__gene_113851	F051213	MNLYKILGALILALSFVFTSCDWVANEPTIEGDSFKYFDSSAQRKSFRVVNASGKRYNHKVDWHIVGITQLGLKTYLTEKVDTLSNGNLKISYDWVSFTVKERKSVIEVEVQKNETGQARSVFFATSNSRYQAHLPNMIITQRAK
SRS043772_WUGC_scaffold_15598	SRS043772_WUGC_scaffold_15598__gene_11094	F085821	MDHIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDASTQKKLRHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEANINKTLSIIRSGETIASRKEDVVELAESLNDEYELNISLLDEYCRTLLCTAETTESQQELVAEIQSHIALLKDLYKKVNKIK
SRS043772_WUGC_scaffold_23996	SRS043772_WUGC_scaffold_23996__gene_19478	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLADAIDSMKKPQTN
SRS043772_WUGC_scaffold_24027	SRS043772_WUGC_scaffold_24027__gene_19542	F049707	VVTEYKSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTIWYFRLVDGGIMTFSSREWEQRDDVNHLTTIHFQPKIRNNEKELT
SRS043772_WUGC_scaffold_42294	SRS043772_WUGC_scaffold_42294__gene_44198	F105377	MRDFDDLPLLTPEEAFERAWEVGGSAHPVFDRGYRVRGLNSWKAIETLLLQNDVPDITVASFGLKRFEEILDAIAMLHERGWHLWQTSANVYVDGEKRPVQAIRAHYRGD
SRS043772_WUGC_scaffold_44140	SRS043772_WUGC_scaffold_44140__gene_48286	F040149	VADEGAKEFRWKVLIKEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPRLAPVWSHDSEDAIHDFIYDASVPKGHTLTAVRERETVVMQLLNIHRMF
SRS043772_WUGC_scaffold_44140	SRS043772_WUGC_scaffold_44140__gene_48287	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALEGNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKAMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA
SRS043772_WUGC_scaffold_44286	SRS043772_WUGC_scaffold_44286__gene_48666	F049707	VVSEYRSPHNDGHDPYILIWEYGSEVQQAEFSERWAEYEPDTGWTVWYFRLDDGRVMTFRALEWEQKDDVNHLTTIYFTPKEKQ
SRS043772_WUGC_scaffold_5223	SRS043772_WUGC_scaffold_5223__gene_2338	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELNNL
SRS043772_WUGC_scaffold_5223	SRS043772_WUGC_scaffold_5223__gene_2345	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIVYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYYEEVK
SRS043772_WUGC_scaffold_5223	SRS043772_WUGC_scaffold_5223__gene_2348	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLSDDTEVSFYKGLNVVYADINFTGGIRTILFKCRQKKNLTRFISRVLELAQGDSSNIHPDFRA
SRS043772_WUGC_scaffold_5223	SRS043772_WUGC_scaffold_5223__gene_2352	F036281	MITLIKIDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNSKEYYDYWTAREGRPAPFFYESRQYHVKSFMRVPGSTDLWITAEREKDHWYTFHMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS043772_WUGC_scaffold_5223	SRS043772_WUGC_scaffold_5223__gene_2353	F074985	MMELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMRLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMYID
SRS043772_WUGC_scaffold_8654	SRS043772_WUGC_scaffold_8654__gene_5167	F043990	MIKKLGIIFIFGVIILGIVVYANHKIERSWIEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDNSFTKLNKLPIKEDLPPNGTPEQFLNTTNGYYKYVVDENDDWNF