7000000125: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764325968

Overview

Basic Information

• IMG/M Taxon OID: 7000000125
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052609 | Ga0031255
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764325968
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 104272844
• Sequencing Scaffolds: 25
• Novel Protein Genes: 29
• Associated Families: 26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	5
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium 43_36	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria flavescens	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → unclassified Candidatus Nanosynbacter → Candidatus Nanosynbacter sp. TM7-057	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F045567	Metagenome	152	N
F046432	Metagenome	151	Y
F051211	Metagenome	144	N
F054110	Metagenome	140	N
F055792	Metagenome	138	N
F067846	Metagenome	125	Y
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F081510	Metagenome	114	N
F085820	Metagenome	111	N
F092229	Metagenome	107	N
F092230	Metagenome	107	N
F092232	Metagenome	107	N
F094006	Metagenome	106	Y
F095629	Metagenome	105	N
F098763	Metagenome	103	N
F099453	Metagenome	103	N
F103430	Metagenome	101	N
F103431	Metagenome	101	N
F103433	Metagenome	101	N
F103435	Metagenome	101	N
F105376	Metagenome	100	N
F105378	Metagenome	100	N
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3456547	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	580
C3462553	Not Available	610
C3494613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	881
C3497861	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	927
C3512083	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1255
C3518875	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium 43_36	1576
C3519845	Not Available	1641
C3529777	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3454
C3533771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	14343
SRS015941_WUGC_scaffold_12936	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1341
SRS015941_WUGC_scaffold_14245	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	14429
SRS015941_WUGC_scaffold_20078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	35776
SRS015941_WUGC_scaffold_26593	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	48400
SRS015941_WUGC_scaffold_29607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria flavescens	7188
SRS015941_WUGC_scaffold_40348	Not Available	898
SRS015941_WUGC_scaffold_43767	All Organisms → Viruses → Predicted Viral	2883
SRS015941_WUGC_scaffold_55285	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	11269
SRS015941_WUGC_scaffold_56577	All Organisms → Viruses → Predicted Viral	2952
SRS015941_WUGC_scaffold_57091	All Organisms → Viruses → Predicted Viral	4731
SRS015941_WUGC_scaffold_67000	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1769
SRS015941_WUGC_scaffold_68484	All Organisms → cellular organisms → Bacteria	974
SRS015941_WUGC_scaffold_70351	Not Available	14980
SRS015941_WUGC_scaffold_7483	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	6698
SRS015941_WUGC_scaffold_74970	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1207
SRS015941_WUGC_scaffold_77761	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → unclassified Candidatus Nanosynbacter → Candidatus Nanosynbacter sp. TM7-057	28573

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3456547	C3456547__gene_158171	F046432	MQMTENELSEVISKFQMPEGRYSIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVESELECYREEGFDNLEAIPRKIETLEIPSDAEDEISKYLFGFYSIFEMKS
C3462553	C3462553__gene_160157	F032313	MACDNDTPQEKPREQEKHEVPVPKSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMLTSKISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWVTTTEFTCRNGVILLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWSVLRLNKNAVEFLQRG
C3494613	C3494613__gene_171117	F092230	MVDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV
C3497861	C3497861__gene_172275	F033081	MHTDITVVYRPKKGVMAWLFRRAMPQDTRPIFVWPKLVVAIEGYFHRRWLVAIAVLLIAVTIVIAKALLLVPGLDNSVVGLLTSIFETFLPARWATGAAWVAGMTGVFLIGDFTDYTPSQKSLHSLRATKWGVYNALLLFALWEEQAFRSGSEKWSWRERVRASVCFGAIHVVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRNQIVATGAAATVHTLYNVIVLSLTVAAAAVYLAIDIAKMM
C3512083	C3512083__gene_177541	F103433	KIMMSQDCNPSQVKPYVSQYGLQARVIAGLSSNDASKIPAYIKRVSIFLAALTAFLLALVVQKIRALFGRITASVFVVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQLVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYMLIGLWADYVVKRTVKYE
C3518875	C3518875__gene_180053	F085820	MLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNRCHFHRTWLTQGVKGIRVLRTRADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGDRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPAGLKQRIVLRLADGTEIEKELSEKGKK
C3519845	C3519845__gene_180412	F032313	MACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLTWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPKFVGGSITKEFTCRNGVILRHMQGIDINLVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEEK
C3529777	C3529777__gene_184953	F051211	MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRRLRAYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
C3533771	C3533771__gene_187624	F054110	VNYQPTIKKLLKALQMNGRRYVVDTRQSWSKYDKPCKVYIVSRMYTEEEYKLTFPEKYKKGKTFKEKQLYKKESEYSSTKQHEVLLFLVRTYKGGD
SRS015941_WUGC_scaffold_12936	SRS015941_WUGC_scaffold_12936__gene_14521	F098763	MDRRASLRILSPALYLATKLFKAVVRTTISYDPSDEVEGKGRMNTIPTAVDE
SRS015941_WUGC_scaffold_14245	SRS015941_WUGC_scaffold_14245__gene_16139	F092229	MNKEYRFKHIPEVVLRNVKFIRENNIDIGTGDDVLECMMEINPVLRQRIYDDYDLAKDVAERRFNSTIEDLDLTTILQKCTTRPYIAILNNIYFRYFNSKLIEDMFKLGESIKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLTDPQVNAVKSAEFTYDLLMAARSENFNPEMVRDIFLKYGLKTNSSRNLYTRMDNNLSLYYYMEDYLDEYVKNGKVTYGSQEYHTIKEFKYLPLMNVLTQLTSSNPSGYILNHKLELVKENE
SRS015941_WUGC_scaffold_20078	SRS015941_WUGC_scaffold_20078__gene_23075	F067846	MSIIADWERQEFNKWDKQCSKEDDYNRAIEMEIEAIKENISNCDDDVICVFREKMLDYDEVISAFDDDAFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEEDYRKGYILND
SRS015941_WUGC_scaffold_26593	SRS015941_WUGC_scaffold_26593__gene_30860	F081510	MKFNVNAIKSTAKTTWVTTKILGKKYAPYILLGAGLVGYGYSVYEGIKSGKKLEATKAKYEQMDAQGDPYSRMEVVTDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMVTEEHARYRLRAKTVLDEETFKKIDAPLETKTVEVDGEEIEVESIVPNEGDFYGMWFKKSHKYASDSPEYNEGVIKEADNVLTEKMMRKGMLTFAEVLDILGFEVPKAALPFGWTDTDGFYLEWDAHEVWNDDKQETEIQFYVRWKLPRNLYATTNFHDFIPKKTRKELK
SRS015941_WUGC_scaffold_29607	SRS015941_WUGC_scaffold_29607__gene_34711	F103431	MIDLDALVVGMLFFIQLFLQGIAWRVAITHFLHAERGNAAAAAFNGAFGEDIADCHTEDDNDKNAESKEEGFHVCIPED
SRS015941_WUGC_scaffold_40348	SRS015941_WUGC_scaffold_40348__gene_48483	F055792	VEIASEALDSTSAVAHRILLLTTQLGESLLASLGTEDGVIAEAMVTGALERDLAIDCTLEEVRPVFVDESDDGAEASTTWGRYTLETLQKEGYILFEGSMLPCEARRVDPRCSVKSLDLEPRIIGEAIESVALPDVTRLDESITLQGIGSLRDLLMTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVS
SRS015941_WUGC_scaffold_43767	SRS015941_WUGC_scaffold_43767__gene_53097	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYVNPIIGVGPEKSYFQTTSYMVDLSPHINNLLVNISDLKNLGKITQLEPSKDNPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDDYNELMAGSASTGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIIVNQSMLFLPY
SRS015941_WUGC_scaffold_47339	SRS015941_WUGC_scaffold_47339__gene_57861	F103435	MKFVFCTEPIYQYYRSYLYADDKDKLDKQLMIEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYQYLIDSPDFETIFSEVLFNQSEVEFYEFYKAIFRFYNGSEVFIIVSNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVYSIRDDIDFSPQGAQLAYLQRAAYYKLEAKKNFESLQVWYPFDMNTYTNALE
SRS015941_WUGC_scaffold_55285	SRS015941_WUGC_scaffold_55285__gene_68651	F081510	MKLPKINVKAIKAGAKTTYNTAKILGKKYAPVVLVTTGLVGYGIAVYQGIKSGKKLEATKAKYEAKDAAGEEYTRLEVIKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTAVTEEHARYRLQCKEVLDEETFKKIDTPMDQVTVEEDGKEAQSFVPKEGLMYGNWFKYSANYASDSPEYNEQWIRESIRVLEEKIARKGLLNFSDMLDQLGFDVPKAALPFGWTDTDGFYIEYDIMEVWNAEEQVHEPQIYVRWKCPRNLYATTNFRDLIPGRKELA
SRS015941_WUGC_scaffold_56577	SRS015941_WUGC_scaffold_56577__gene_70436	F095629	MEVFKMRELIICACLFGCFGVANAAAPVDQPKEVKVVHNDDSVALHKKVYKLEQRIERLEKLLAEKEGK
SRS015941_WUGC_scaffold_57091	SRS015941_WUGC_scaffold_57091__gene_71248	F092232	MNTQAKFIADYNDKNRPKFNDKFFTKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYTEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTAAAAKTQSITLKTNSNAVKMLRNFVDLNTTKEKTLRMAMFSVYLFDHKVTLFEYYLARFGWYETLSKFNFEDIIKISDHDIDDPEYYTFAIANAHMKNPFYISAVKSFVDNDRILQSFIASFAKAISLYATKKTTLDQIYTTEFWVCKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDDNFSKMLNIYREEKGYTSAIMLADDAGLELTDNRDPEAVAFDAHLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV
SRS015941_WUGC_scaffold_67000	SRS015941_WUGC_scaffold_67000__gene_85479	F103433	MMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGKITASVFVVMLSFSPWTAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESIAIFLKLLNGYEYVSTIAISVLVPIVFFELVHKNVKIINLWKQAVPVFTATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINKIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSFRKIISKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYMLIGLWADYVVKRTVKYE
SRS015941_WUGC_scaffold_68484	SRS015941_WUGC_scaffold_68484__gene_87808	F045567	MVTEDVVHTSTHRVEDALLSVDGDILTPCDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
SRS015941_WUGC_scaffold_70351	SRS015941_WUGC_scaffold_70351__gene_90833	F105378	MKVNVYVDKLKKWVPISSDEILDRNKNLSDVKDKDAAITNLGLYDKFISKEALQSGFLPDVFTPENIQTDADHQFVSDSDKNNWNNKLNKPVEIQTNLEENQIGYDEVNEKFYIGLNNKNVLIGGASALDNIKIVNGFFSGNSQPTIIRNTKTREDGTLISPVFVDVQCVEYTGGDLGEVSVSYTSELINIYNTGSFTGAFQCMIVYPLGSVNR
SRS015941_WUGC_scaffold_7483	SRS015941_WUGC_scaffold_7483__gene_8577	F099453	MLRRKDMNRFDIIELAQETLIFVYNTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVEAHKFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQARLANLTNIIYTPKYPMAIAMGKLEYMLGRKFREFSNNNIEIEYVDRLKTHYVFMVCENRIYINSANLNDLGERLLNDKQYTVEYLEYGDSKLVIKITQGV
SRS015941_WUGC_scaffold_7483	SRS015941_WUGC_scaffold_7483__gene_8579	F080166	VNILANFENYTKVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGIIIDWDNYDDLCNIIDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHIEDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMK
SRS015941_WUGC_scaffold_7483	SRS015941_WUGC_scaffold_7483__gene_8580	F081455	METTVNKNIMVNEDTTAFDDFITYALTRKLPEGYDIPPVEEIGMQNVEIIDSAEEAIQQPLANTDSSIAVNFSQMINKPEEVKTELVSTPDNGEAKVNVVFPKTEHILGNYVDYDSFNKIKESNTDKVVRAVRLLNYKMADQNAAMKFGQFVSEFNPNGDPNKRLRYELIRHQGREKDLVVRLSTVINGTTKYYADIYPDLNKIDVDHHLISSARK
SRS015941_WUGC_scaffold_74970	SRS015941_WUGC_scaffold_74970__gene_99556	F094006	MRGTLEPAGSTGALHEPAVSMEAHIGYLQAGGIARRGLFTFGGRHLLAVAELGAEAPHAIDMHDIALCEPLSELFTEELEYAFNFGA
SRS015941_WUGC_scaffold_77761	SRS015941_WUGC_scaffold_77761__gene_106048	F105376	MNEKPEVSAKEFGALQAKVEYIKDGVDKHTVMLERIENIARDNVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQTQVRRK
SRS015941_WUGC_scaffold_77761	SRS015941_WUGC_scaffold_77761__gene_106051	F103430	MIEQITIKAFIGSNNKTKELEVDKIISTVNANHEAFTLDYPVIGYWRGETEETAVLYLSDERQKVMNTLNELKEVLDQEAIAYQIENDLQLI