Basic Information | |
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IMG/M Taxon OID | 7000000118 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0052602 | Ga0031086 |
Sample Name | Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158944319 |
Sequencing Status | Permanent Draft |
Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 104088236 |
Sequencing Scaffolds | 16 |
Novel Protein Genes | 17 |
Associated Families | 17 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 3 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus | 1 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 3 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
Location Information | ||||||||
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Location | USA: Maryland: Natonal Institute of Health | |||||||
Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F040149 | Metagenome | 162 | N |
F043235 | Metagenome | 156 | N |
F047508 | Metagenome | 149 | N |
F049707 | Metagenome | 146 | N |
F051212 | Metagenome | 144 | N |
F053092 | Metagenome | 141 | N |
F057446 | Metagenome | 136 | N |
F059076 | Metagenome | 134 | N |
F063778 | Metagenome | 129 | Y |
F081454 | Metagenome | 114 | N |
F084342 | Metagenome | 112 | N |
F092232 | Metagenome | 107 | N |
F094006 | Metagenome | 106 | Y |
F095631 | Metagenome | 105 | N |
F095632 | Metagenome | 105 | N |
F097526 | Metagenome | 104 | Y |
F103436 | Metagenome | 101 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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C2074487 | Not Available | 834 | Open in IMG/M |
C2104521 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae | 1423 | Open in IMG/M |
C2113247 | Not Available | 2012 | Open in IMG/M |
C2119372 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus | 3588 | Open in IMG/M |
SRS024289_LANL_scaffold_12419 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 43852 | Open in IMG/M |
SRS024289_LANL_scaffold_19508 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 903 | Open in IMG/M |
SRS024289_LANL_scaffold_24094 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 | 15211 | Open in IMG/M |
SRS024289_LANL_scaffold_26983 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces | 6965 | Open in IMG/M |
SRS024289_LANL_scaffold_39798 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 1013 | Open in IMG/M |
SRS024289_LANL_scaffold_43882 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 952 | Open in IMG/M |
SRS024289_LANL_scaffold_5397 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 924 | Open in IMG/M |
SRS024289_LANL_scaffold_57827 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 835 | Open in IMG/M |
SRS024289_LANL_scaffold_62003 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 5248 | Open in IMG/M |
SRS024289_LANL_scaffold_68997 | Not Available | 1674 | Open in IMG/M |
SRS024289_LANL_scaffold_71237 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae | 6434 | Open in IMG/M |
SRS024289_LANL_scaffold_845 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 | 13592 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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C2074487 | C2074487__gene_168779 | F043235 | LAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRCMASNVLLPGSAH |
C2104521 | C2104521__gene_178542 | F053092 | MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHAVQLFGVLGAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK |
C2113247 | C2113247__gene_181596 | F040149 | VADEGAKEFRWKVLIKEQGIPVLFVEVVAWYDGRVSSSEILSSFGIALEREPRLTPVWHHDSEDAIHDFIYDISVPKGHALTAVRERETVVMQLLNVHRMF |
C2119372 | C2119372__gene_183919 | F103436 | MITTSKYGWCDDKSDAEILNSLKDWVSSCDVDFKREALKKIDSAFALWGGRQYVAAVDLLDENEVFLKKSDWPYYALGIEILKARKHEFFNE |
SRS024289_LANL_scaffold_12419 | SRS024289_LANL_scaffold_12419__gene_14619 | F095632 | MSFKDTTGYKVVNFVASTTASITAGAVVSALCPPAGIALTVVYSLGSGVLGSYVGDKAGRQYAENFAETIDSIKTPSNN |
SRS024289_LANL_scaffold_12419 | SRS024289_LANL_scaffold_12419__gene_14643 | F049707 | VVSEYKSPHNDGHDPYILIWEYGSEVQQEEFVERWSEYEPDTGWTVWHFRLADGRVMTFRALEWEQRDDVNHLTTIYFTPKQKEN |
SRS024289_LANL_scaffold_19508 | SRS024289_LANL_scaffold_19508__gene_23913 | F051212 | FMKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYHLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSQLYNHLNLEK |
SRS024289_LANL_scaffold_24094 | SRS024289_LANL_scaffold_24094__gene_29944 | F092232 | MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGNQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFVAAFIISINKYATKKFTLDNIYNTDFWVCKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRNPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED |
SRS024289_LANL_scaffold_26983 | SRS024289_LANL_scaffold_26983__gene_33704 | F063778 | MPETISEGAQQQLLQQLQDALGLVADADTSAHDVAAITQSAADGHQLTEVMLQEMTAARSYLKSCADQIEHAISNVKAIPLDPPPDD |
SRS024289_LANL_scaffold_39798 | SRS024289_LANL_scaffold_39798__gene_51891 | F057446 | MNSISFGKTTITSYPEYFEITDNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVPYFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQI |
SRS024289_LANL_scaffold_43882 | SRS024289_LANL_scaffold_43882__gene_57862 | F047508 | VEAIATDAVLVVEFVGEPVHIGMLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFKNVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP |
SRS024289_LANL_scaffold_5397 | SRS024289_LANL_scaffold_5397__gene_6006 | F081454 | MKAFKLVLLLFITSASLVFGQEKRYFFKYEYHPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVEMKMNMNIGSTISTQKKQDNNIPFVLEYTDYISEAEINGEKVNRKIPIQGVKLRGDIINGKKMEVKNVEGNIDEDTKKILTESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDMLIDFVMGDKNVKNIDLSASGDGKGFLLFDMKNNYF |
SRS024289_LANL_scaffold_57827 | SRS024289_LANL_scaffold_57827__gene_79867 | F059076 | GGVSINAQVINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYNKNISSAMDADLGGNTATTTNYTDYRPLVVDKVGDVYKGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQKLE |
SRS024289_LANL_scaffold_62003 | SRS024289_LANL_scaffold_62003__gene_87051 | F094006 | MRGTLEPAGPTGALYEPTVSVEAHIGELQAGGIACRSLFAFGGSNVLAVAELGAEAPHAIDMYDIALCKPLSELFAEELEYAFNFGA |
SRS024289_LANL_scaffold_68997 | SRS024289_LANL_scaffold_68997__gene_101198 | F084342 | AIPIRRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE |
SRS024289_LANL_scaffold_71237 | SRS024289_LANL_scaffold_71237__gene_107234 | F097526 | MTAGNATAIAPYTQDGYRQLCERLDDDTVAALLHAHIRAFAADGNRQLLKRLTDAMRIAAEFEQACRNENPDPAEQARRARWDNQFRELQQQARMAHCEIVNADNAAVSHLTRQCEKNGSRDTAIPSPHDDGYGFTAGLRDFSLNASQTALLWRMAVLTIAEITETTPPLVASYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLSHTAKLLRLTEVAEMRGAMPHRAVWQADNPKSRQSTLEPGE |
SRS024289_LANL_scaffold_845 | SRS024289_LANL_scaffold_845__gene_970 | F095631 | MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSTNINYDRLNLLVVPTAEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAAADKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYNYVNTEDKIQSFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTEDNKLDISIIIA |
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