7000000099: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 604812005

Overview

Basic Information

• IMG/M Taxon OID: 7000000099
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052575 | Ga0031320
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 604812005
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 66335924
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4
All Organisms → cellular organisms → Bacteria	1
Not Available	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F051210	Metagenome / Metatranscriptome	144	Y
F067846	Metagenome	125	Y
F073671	Metagenome	120	N
F078842	Metagenome	116	N
F089055	Metagenome	109	Y
F092232	Metagenome	107	N
F094007	Metagenome	106	N
F098763	Metagenome	103	N
F099453	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3265826	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	718
C3272937	All Organisms → cellular organisms → Bacteria	811
C3289035	Not Available	1277
C3291011	All Organisms → Viruses → Predicted Viral	1421
C3292389	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1549
C3296045	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	2255
C3296549	All Organisms → Viruses → Predicted Viral	2434
SRS055426_LANL_scaffold_33304	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1763
SRS055426_LANL_scaffold_38682	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	724
SRS055426_LANL_scaffold_44331	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	939
SRS055426_LANL_scaffold_48409	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	622
SRS055426_LANL_scaffold_55648	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses	45748
SRS055426_LANL_scaffold_56029	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	666

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3265826	C3265826__gene_118057	F089055	LKVEKMNSTPECVTKTPEIEAREKLAAIFSDAEQRGDNSKVNPELGKTAIDIENTSKMDSADNGAVDFCNQALGSYGKSLDYINNSPLETVQAIGNSLQLFREDKTKESCK
C3272937	C3272937__gene_120805	F040149	VADEGAKELRWEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPRLTSVWSHDSEDAIDYFIYDVLVPEGHALTAVRERETVVAQLLNIHRYVYYP
C3289035	C3289035__gene_127235	F073671	MNKEQAEHELAELHEKERSLEKALELVREKIRELVNYMDKNKGQK
C3291011	C3291011__gene_128051	F092232	KLLKVTYYVGCTKDEETFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTATSAKTQSITLKTNSNAVKMLRNFIDLNTTKEESIRLAMFSVYLFDHKVTLFEYYLARFGWYDTLEKFNFQDIIRITDYDIDNPEYYTFAIANSHMKSPFYISAVKSFVDNDRILQSFIASFQRAIMLFATKKTTLDQIYTTQFWIQKLGFNFVSSETSTFTKGNAIIESLENSYDIPTKKRLRLPDEIKADIYSVLKWMACEFSSIRLKNNLDASTKRIRWSEYIAAMYIMLINIKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNHGVYEWNSFTNEEEPNVWDENFSKMLNVYREEKGYTSAIMLAEDAGLELTDTRDPEAVAFDAQLLGQTIAMVAR
C3292389	C3292389__gene_128617	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLKRLQDNEFFVLGDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDAALRAASECGIEMNRNIAEVDRSELSKKLREVQISPWRKQIDMAYRKAHNESSVNTLFHTSYVKYSKESDDLFREYVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEVSISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSVRIRQMVNSIELDIYEVNS
C3296045	C3296045__gene_130327	F099453	MLRRKDMNRFDIIELAQQTITFVHSAFNGKVNALDPYTRLNFVSGYLDKKTNIARTTPYGCIYVSLEAFADTVEAYKFIDTDQIRNLALEIVIHELTHVDQLIDYRYIKFNNGYREEIERQCVKQSCQWILDNIQFIRSLGLVVIPEVYEERLVGLSDVTYAFKNPVVIAMSKLEHMIGKKFKEFNSNDIEIHYVDRLKNYYKIPVCVNRMYQNSQNLNDLGERLLNDKQYTIEYMEYGNSKLVIKITQGA
C3296549	C3296549__gene_130586	F067846	MSIIADWERQEFNKWDKQCSKEDDYNRAVEMEIEAIKENISNLDDDVICAFREKMLDYGEVINAFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEEDYRKGYILND
SRS055426_LANL_scaffold_33304	SRS055426_LANL_scaffold_33304__gene_34231	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRHPKGAVALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPYHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS055426_LANL_scaffold_38682	SRS055426_LANL_scaffold_38682__gene_40950	F033081	QDPRPVFVWPRLVAAIGNVGYFSRRGFSVLAVGLIIVTIATIKILLFVPGLNQSVVSLLTRGLETFLPTGWATIAAWVVGTTGVFLIGSFTSSYTPSQRLLYSLEATGCGVYDTLLLLALIEEQAFRSGSEKWNWRERVRTSVCFGLLHIANIWYSFAAGIALSATGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL
SRS055426_LANL_scaffold_44331	SRS055426_LANL_scaffold_44331__gene_48067	F094007	MKLKTVEVLELARPSRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYGDEDFTKRNRIIVEMCDLFGGIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLNYKKVRTAISLTKAGKKRSGWNKGCIDNNA
SRS055426_LANL_scaffold_48409	SRS055426_LANL_scaffold_48409__gene_53385	F098763	MDRRTSLRVLSPALYLATKLFEAVVWTTIADDSSDEVEGKGGMNAVPTAVDE
SRS055426_LANL_scaffold_55648	SRS055426_LANL_scaffold_55648__gene_65343	F051210	MNNYSQILGNSAMMDALRASSVSAEDARLRGNEYAKMFSRNEEMMDVFGLGGNNTNLLQKTFSGYSETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDLRSVLPNLGPDQYQDVQVMGGFELPVTVNAGTAAYSPLVGRKLIPGTVRVKVEDGTGKKYELIDNGQGSFMAVAGVLKTGTVNYLNGKIDFELTTAVPANGSITIVGKEDTTGTPSCTNGASNAHANDKRFIAKMQQIALNTVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKTINFKLVSTLEKGYAGNVMDDLDLSNAPASLASKFMDYRSRVDLFDAYLINVESALATKAVKGVTTTAYIAGNQAANQFQKGGVIGKFERNTKMTYISDLLGWYDGVPVLRSTDIQEKAGEGTFYAIHKTQDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYLAPELVQKVSFKFGF
SRS055426_LANL_scaffold_56029	SRS055426_LANL_scaffold_56029__gene_66195	F045567	MVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR