7000000040: Human stool microbial communities from NIH, USA - visit 2 of subject 763759525

Overview

Basic Information

• IMG/M Taxon OID: 7000000040
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052505 | Ga0030572
• Sample Name: Human stool microbial communities from NIH, USA - visit 2 of subject 763759525
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 108278297
• Sequencing Scaffolds: 13
• Novel Protein Genes: 21
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes putredinis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F058555	Metagenome	135	N
F073656	Metagenome	120	N
F075481	Metagenome	119	N
F076190	Metagenome	118	Y
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N
F087334	Metagenome	110	N
F087336	Metagenome	110	N
F088921	Metagenome	109	N
F089053	Metagenome	109	Y
F090514	Metagenome	108	N
F098313	Metagenome	104	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS043411_WUGC_scaffold_10552	Not Available	23678
SRS043411_WUGC_scaffold_13316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	525
SRS043411_WUGC_scaffold_15144	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	51622
SRS043411_WUGC_scaffold_16178	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes putredinis	130106
SRS043411_WUGC_scaffold_18625	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	12214
SRS043411_WUGC_scaffold_21074	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	24960
SRS043411_WUGC_scaffold_21792	Not Available	1678
SRS043411_WUGC_scaffold_25921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	961
SRS043411_WUGC_scaffold_38836	Not Available	22659
SRS043411_WUGC_scaffold_43621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	786
SRS043411_WUGC_scaffold_4763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2075
SRS043411_WUGC_scaffold_50404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	22185
SRS043411_WUGC_scaffold_7199	All Organisms → Viruses → Predicted Viral	3497

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS043411_WUGC_scaffold_10552	SRS043411_WUGC_scaffold_10552__gene_18661	F075481	MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTVDSLGIDKAITGVKDIDKKTDIEHKDVDDKKEPRWPIAITSISVLLILLVLIYLLKKMKVL
SRS043411_WUGC_scaffold_10552	SRS043411_WUGC_scaffold_10552__gene_18665	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGKDNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDMPGLEFLVVSHTLYVYDGIPVDRLSRSKKLIYIDLQNMGQRMTVIPEAIISKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLNLSSCYLDRYIKEFNDLPKLTSLNITHGPSDMWNYFDINTLPFFEVDKINPNITDFAFLNDWMNGERRTGWNDDNMSGRGLDHLTGFTVNHSNSLRMDKLPDYIYEMRAITGFGVRASTHSQKRSDDFVDSFYKLVTEWDQITMTSVANDGKRNQFYGLSVSMYDAIYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
SRS043411_WUGC_scaffold_13316	SRS043411_WUGC_scaffold_13316__gene_23635	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVPPRLTGANWFVILLTIVPAGSRTRAGSSLPLIPASNNF
SRS043411_WUGC_scaffold_15144	SRS043411_WUGC_scaffold_15144__gene_27220	F050794	MMLYTSNYFVKVRQKQLLDHTYSLSRDQAFDYMTEFNERLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIKDMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVEMIETRYNRFVW
SRS043411_WUGC_scaffold_15144	SRS043411_WUGC_scaffold_15144__gene_27231	F098313	MREKKFDFVIYPLDLIITVGLDYKTLCDRFENMEPEHNGEWGNKEDMDKEASFVNLVKDRDDDGRFAILWDFSSDDDITIKNTCHESFHVAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGGCAYDFLYSNSTE
SRS043411_WUGC_scaffold_15144	SRS043411_WUGC_scaffold_15144__gene_27268	F076653	MTLSDKYFGWKDIFFDRFVHCCNEKSGQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYRCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFSSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYNKGFKKRLAKRFNESLRGGGDLFGANLACMVCDHKDIDWEALRLWLDKYDEPNDKGMVNSPIQFMYLYLYYYFNK
SRS043411_WUGC_scaffold_15144	SRS043411_WUGC_scaffold_15144__gene_27276	F083451	MYKSEKEKQILDLLMSRKDIRKLVEKSNECYSKMDFVGAMRYRQEIKDIVDRESKIMLTKSESLIGLMNNADNEYKFNILVWLHSMMCMADVFSGILEDFKDGVRKANGNSKFVKFDNLDRLMAECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM
SRS043411_WUGC_scaffold_15144	SRS043411_WUGC_scaffold_15144__gene_27295	F078005	MEKSEFVKKLEKIIDMVKTEDDGFEYGGKVIFYKEDDSNYEVSVMNIEMNLEVEANVMAGMDDMDFTCLMSEVYKQKAVKAIMMEEDDDEDN
SRS043411_WUGC_scaffold_16178	SRS043411_WUGC_scaffold_16178__gene_29267	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGAVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGTEFHLKRH
SRS043411_WUGC_scaffold_18625	SRS043411_WUGC_scaffold_18625__gene_33946	F106193	MMNRASSTVVSDMEYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAIYIKP
SRS043411_WUGC_scaffold_21074	SRS043411_WUGC_scaffold_21074__gene_38771	F058555	MKLVYLQQKKNIMETKVALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYRHVIEDCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKDIFVGKKRSVYKCLNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKNLIDIGMQEISKSTIYRYISMFLDMCKKSISDLYEEVVKNNGVVNTKDNNNVTIGHIRASYKGSVLYILISTDYIINVFLGKKSAEMSKA
SRS043411_WUGC_scaffold_21074	SRS043411_WUGC_scaffold_21074__gene_38786	F083452	MQGYWIIDMSGRVKIKSKDKDKKPKIDVFKVIENRFKNMNELRDLIDMDPRKGMVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYIKRK
SRS043411_WUGC_scaffold_21074	SRS043411_WUGC_scaffold_21074__gene_38794	F080673	MDEITKLQDEALLYLRDNITREEAYYILTTDKEMIEILISDKKDGSKRIKILDMEYTIEKDDMLLLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILYNINREKVMKYPYIAIQLDNIQTIEKRRVVFEITGHRMDDNKERIDFMFIYFMARLCV
SRS043411_WUGC_scaffold_21792	SRS043411_WUGC_scaffold_21792__gene_40259	F087336	MHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAPQEVNSQSALSESNQL
SRS043411_WUGC_scaffold_25921	SRS043411_WUGC_scaffold_25921__gene_48295	F089053	MEGPRPDKFAFGVKLERVVDECRPVKGCIRKWLYIFANGQPKLSTAEEVNVKNMEAFL
SRS043411_WUGC_scaffold_38836	SRS043411_WUGC_scaffold_38836__gene_76847	F077313	MGKYVIKRKIPKYQDAGEVDPIMPGDVVGLQGLGVEPLVSSTQIGFDIQQPDINTIDTSDLNAIVDSNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSKGYGDLSTGAKTANVVGTVMSGIGGVLGLARNVFSGMASEQGTRTNIRLAQEREARQRRQSQMRYKDGGGVYLGPNNRFDSGSLTGECLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADDGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLEKNNKIDDENTRRLNASVLSKAINDSNDIVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDVAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGVNTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVETNRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRAWADNVNARTWADTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDAKIGPNGQLIVDPQGDILSYRILYPAQEVTKGKKG
SRS043411_WUGC_scaffold_43621	SRS043411_WUGC_scaffold_43621__gene_88149	F076190	ARTAGGSITISVKNVFMAASRVSGRVWSLVRITIPNDLKFVKIRVEKPQNNSLYPHFQREPL
SRS043411_WUGC_scaffold_4763	SRS043411_WUGC_scaffold_4763__gene_5866	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLVITFLYHPKDFFLYRAAALFEYREKHQ
SRS043411_WUGC_scaffold_50404	SRS043411_WUGC_scaffold_50404__gene_108094	F088921	LGGCKKIAVKTSALGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMRSK
SRS043411_WUGC_scaffold_7199	SRS043411_WUGC_scaffold_7199__gene_11312	F078006	MEDNILKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCGIKEEATFDLATALDVLNEPLPRWCKSYGVYPEQYKDIDRWYNSDNYNKKIFKEI
SRS043411_WUGC_scaffold_7199	SRS043411_WUGC_scaffold_7199__gene_11314	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEPRILCDNGKGNSPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIGGYIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDKATV