7000000033: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765337473

Overview

Basic Information

• IMG/M Taxon OID: 7000000033
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052497 | Ga0031058
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765337473
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 40242709
• Sequencing Scaffolds: 6
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F073671	Metagenome	120	N
F074985	Metagenome	119	N
F077405	Metagenome	117	N
F095632	Metagenome	105	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1298324	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2273
SRS019333_WUGC_scaffold_12174	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	11945
SRS019333_WUGC_scaffold_16267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae	4422
SRS019333_WUGC_scaffold_16412	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43587
SRS019333_WUGC_scaffold_22095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae	8948
SRS019333_WUGC_scaffold_24808	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3017

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1298324	C1298324__gene_70441	F095632	MTMSFNEKTVYQVVSLTASTCASITAGAVVSALCPPAGAALTVIYSLGSGVLGSYVGEKAGQQYAESLADTIDSMKKSQTN
C1301182	C1301182__gene_72068	F043991	MGKKKPSAVDGFDLNGNIIEEANEFDGVLIEDWVNQRSPLKPSWVGRYSDNMHFDLKDGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA
SRS019333_WUGC_scaffold_12174	SRS019333_WUGC_scaffold_12174__gene_11714	F074985	MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAIYVEFKVSEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQKAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGNFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFLYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSKTGEQKYLLDHIKAMHID
SRS019333_WUGC_scaffold_12174	SRS019333_WUGC_scaffold_12174__gene_11715	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLISNGSVLFLAEERKTYNAKEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFHMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS019333_WUGC_scaffold_12174	SRS019333_WUGC_scaffold_12174__gene_11716	F027205	VASRLIVSADDILKAVKESEAFERKALSEARKRDRAEGKEPRETLYPNADLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK
SRS019333_WUGC_scaffold_12174	SRS019333_WUGC_scaffold_12174__gene_11721	F071329	MLPVAKIIISGLTSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED
SRS019333_WUGC_scaffold_12174	SRS019333_WUGC_scaffold_12174__gene_11722	F018385	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNTKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLHHEEVK
SRS019333_WUGC_scaffold_12174	SRS019333_WUGC_scaffold_12174__gene_11729	F067847	PTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELNNL
SRS019333_WUGC_scaffold_16267	SRS019333_WUGC_scaffold_16267__gene_16489	F073671	MTNNKQAEHELAELHEKERSLEKALELVREKIRELINYTNKNKSAR
SRS019333_WUGC_scaffold_16412	SRS019333_WUGC_scaffold_16412__gene_16672	F101360	VSKESALRRAAIAAHIAKVASQEKKKALKELEEYMAPGDTSKPMIDGLQVGTVSVSSPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEAVQGDPRISVRISTAQEEAIRELISTGDISILEIESGDA
SRS019333_WUGC_scaffold_16412	SRS019333_WUGC_scaffold_16412__gene_16699	F103434	VVEVTLAVVKEGRTGRRFERGETFMIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTEAK
SRS019333_WUGC_scaffold_22095	SRS019333_WUGC_scaffold_22095__gene_24198	F077405	LPTELFPRLLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQKQKVRLK
SRS019333_WUGC_scaffold_24808	SRS019333_WUGC_scaffold_24808__gene_30183	F049707	VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTVWMKPSLYDIERKEN