7000000018: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 370425937

Overview

Basic Information

• IMG/M Taxon OID: 7000000018
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052482 | Ga0031076
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 370425937
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 173109127
• Sequencing Scaffolds: 27
• Novel Protein Genes: 30
• Associated Families: 27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
Not Available	5
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga gingivalis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F043990	Metagenome	155	N
F045567	Metagenome	152	N
F047508	Metagenome	149	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F054111	Metagenome	140	N
F055792	Metagenome	138	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F064819	Metagenome	128	N
F076191	Metagenome	118	N
F077403	Metagenome	117	N
F077405	Metagenome	117	N
F084342	Metagenome	112	N
F084362	Metagenome	112	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F090516	Metagenome	108	N
F095630	Metagenome	105	N
F097525	Metagenome	104	N
F103430	Metagenome	101	N
F103431	Metagenome	101	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C5779662	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	612
C5808090	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	741
C5835036	Not Available	940
C5886307	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2836
SRS022725_LANL_scaffold_101196	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	4280
SRS022725_LANL_scaffold_101927	Not Available	1482
SRS022725_LANL_scaffold_102746	Not Available	4731
SRS022725_LANL_scaffold_103859	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	7835
SRS022725_LANL_scaffold_119078	Not Available	6558
SRS022725_LANL_scaffold_1852	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	34363
SRS022725_LANL_scaffold_24326	All Organisms → cellular organisms → Bacteria → Proteobacteria	754
SRS022725_LANL_scaffold_2649	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	3739
SRS022725_LANL_scaffold_31289	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2003
SRS022725_LANL_scaffold_38242	All Organisms → cellular organisms → Bacteria	1674
SRS022725_LANL_scaffold_38621	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1963
SRS022725_LANL_scaffold_44666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	2771
SRS022725_LANL_scaffold_50445	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	774
SRS022725_LANL_scaffold_58663	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	522
SRS022725_LANL_scaffold_63602	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga gingivalis	5216
SRS022725_LANL_scaffold_65191	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	11891
SRS022725_LANL_scaffold_726	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides	8473
SRS022725_LANL_scaffold_73926	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2497
SRS022725_LANL_scaffold_78257	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	15717
SRS022725_LANL_scaffold_80000	All Organisms → Viruses	2806
SRS022725_LANL_scaffold_88178	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	5369
SRS022725_LANL_scaffold_95047	Not Available	664
SRS022725_LANL_scaffold_97308	All Organisms → cellular organisms → Bacteria	2600

Sequences

Scaffold ID	Protein ID	Family	Sequence
C5779662	C5779662__gene_303494	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFGKVAYFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMN
C5808090	C5808090__gene_307245	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFFELLGLLEWFEQISANKEKSTEIDFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFERE
C5835036	C5835036__gene_310431	F077403	MSAIYAEERISVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSERAYYLQGYLYYLLTPQLDHDWYQVTYLLEHMNHSVGTETTGTEGVLKPFVHHLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDRYEGYQLYQGQVRGDSI
C5886307	C5886307__gene_314569	F095630	MCYSPLYKISKDNGLLAHVYEHLLAQYILKYLQDKGFFILSDIILTAKTYGDTCYMDVELYNPAAPNVYNEALQAFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMTYRKSYDKSSVDTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIVMQTVALNFLVAVRENYTVYDRDDQWSEASLSVGYRMFLGLAKEDKQITSQLKHEFTTYIQYLLKSPFCSNLQKALLRCSRNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI
SRS022725_LANL_scaffold_101196	SRS022725_LANL_scaffold_101196__gene_225443	F022002	MSRRLALTPGLPLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFDYEGHSMSKNAYIAYTDLELERARSAEKESEI
SRS022725_LANL_scaffold_101196	SRS022725_LANL_scaffold_101196__gene_225444	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYERCPTLSVRLYFYKGHLRSMSFTFDDLEIFEQIESRLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI
SRS022725_LANL_scaffold_101927	SRS022725_LANL_scaffold_101927__gene_226948	F084362	MSLMNCTFTVRWSDDKNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLQDSEKQPEAAAEQKGFWWEK
SRS022725_LANL_scaffold_102746	SRS022725_LANL_scaffold_102746__gene_228672	F084362	MNCTFTVRWSDDKNKPHAKTYATESDAKRAKKWLLEHGVRSVDIAIKINNKPAGSLEDDKPSETEAEQKGFWWEK
SRS022725_LANL_scaffold_103859	SRS022725_LANL_scaffold_103859__gene_231269	F051213	MNLYKILGALILALSFVFTSCDWVSNEPTIEGDRFKYFDSSAQRKSFRVVNASGKRYNHKVDWHIIGITQLDSDTFFTKKVDTLSNGNLKISYDWVSFTVKERKSVIEVEVQKNETGQARSVFFATSNSRYQAHLPNMIITQRAK
SRS022725_LANL_scaffold_119078	SRS022725_LANL_scaffold_119078__gene_266160	F076191	MKIIAENPAEEALLRRIKALSAELVNQDNRSTDMPMWTILDNNKAGKDYGAVMYFTGKAAKQHIDENDHHYENPMIYIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLSDA
SRS022725_LANL_scaffold_1852	SRS022725_LANL_scaffold_1852__gene_3725	F103430	MKLITIKAFIGSDNQTKQLNIDTIVSIVNTNHEAFTLQYPVIGYWRGEAEETAVLYLSDERQKVMSTLNELKEVLNQEAIAYQIENDLQLI
SRS022725_LANL_scaffold_24326	SRS022725_LANL_scaffold_24326__gene_59996	F103431	DLMIDLDALIVGMLFFIQLFLQGIAWRIAIAHFLHTERGNAAAAAFNGAFGENIADCHAEDDKDKDTESKEEGFHVCIPEG
SRS022725_LANL_scaffold_2649	SRS022725_LANL_scaffold_2649__gene_5862	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCCGLGIVTRYPEGAIALFIGLAHRDQSDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSTH
SRS022725_LANL_scaffold_31289	SRS022725_LANL_scaffold_31289__gene_75905	F064819	IKFSDIVRLNKEEPVFVKMKVRISTEIMISEEDLDIERSDLEDLIRNLKDLCEYKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEILQEIKKY
SRS022725_LANL_scaffold_38242	SRS022725_LANL_scaffold_38242__gene_91642	F089056	MNKKMNVFCKIILPLLCIISCSKRKEADNTKTLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSISLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDISFIAITFTNKNEILFRKGIQ
SRS022725_LANL_scaffold_38621	SRS022725_LANL_scaffold_38621__gene_92463	F090516	LGKERLLELIYQIINKMKSNLSLKLFLAFERYFIENDEVISLDKSLEFTDVIVGIGFLPHDMSENTDFKKKILKKYGFSSATALAEDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYFDLDNDAETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLVTDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYEGISEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLYPYHLWLCHLDEGADAYLFLLFPEEDMPEIMKLARILDLPLKAYFK
SRS022725_LANL_scaffold_44666	SRS022725_LANL_scaffold_44666__gene_105792	F077405	LPTELFPRLLVAKQRGVFYGFILLCQIKFVKKFFDWLKIIQKQKGRLK
SRS022725_LANL_scaffold_50445	SRS022725_LANL_scaffold_50445__gene_118159	F043990	MIKKLGIIFTFGVIILGIVVYAGHKIEKSWIEGEFGVNMSNMNIDEKYREEEWAPNGDGERVIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNNTNGYYKYIGDENDDWNFGILIVDT
SRS022725_LANL_scaffold_58663	SRS022725_LANL_scaffold_58663__gene_135973	F030786	MKRTKIHKVVFQMLVVMVVTSSLQMLLKNGSATKGGSTMGTKKISLTDITEGDDSKEGVIKVKYFDDDGADKIFENNNNIILNTINSQHISFNSQSAEYSKPQLFLLYQSLKVDC
SRS022725_LANL_scaffold_63602	SRS022725_LANL_scaffold_63602__gene_146368	F054111	MNKSLESITHKEFLKLMERLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLEIESLSTADRDLFLNILDKEILFLI
SRS022725_LANL_scaffold_63602	SRS022725_LANL_scaffold_63602__gene_146370	F054111	MVFKNLEKESMNKPLDNITHETFLKLMKHLKNLQEFTFLEYIIAPEADIFYFNFMEKIVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSLENQ
SRS022725_LANL_scaffold_65191	SRS022725_LANL_scaffold_65191__gene_149705	F055792	MEIVSQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVPRALERDLAIDCTLEEVGPVLIDKGDDGTEAGTTWGRYTLKTLQKEGYILFEGSMLPCEARRVDSRSSIKSLDLEPRIIGKTMKPIALPHVARLDEGIPLQRIGSLRDLLVTPDVSQADDLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA
SRS022725_LANL_scaffold_65191	SRS022725_LANL_scaffold_65191__gene_149706	F040149	VADEGAEELRWEALIKEQGIPVLFVEVEAWYDGRVSSSEILHSVGITLEREPRLAPVWSHDSEDAIHDFIYDTSVPKGHALTAVRERETVVMQLLNIHRMF
SRS022725_LANL_scaffold_726	SRS022725_LANL_scaffold_726__gene_1458	F047508	MLGHCLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYHLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS022725_LANL_scaffold_73926	SRS022725_LANL_scaffold_73926__gene_168196	F059076	MTNKILLLGLLLGGVSINAQVINETKAAGKTGQKVGINTNIPTRTLTIKNSTPNNGKPLLRLVDAPIYSKNVGSAMDADLGGNTATSTNYTDYRPLVVDKVGDVYQGLPINNMNILTLTIDNVNGDYIRKFDTGIDYKKYAVTIMNAIFKMPDAGAGKIVMLRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGRREAVNFTELNFNQGGSAEGIGNSNTTYATQLQNFLQKLE
SRS022725_LANL_scaffold_78257	SRS022725_LANL_scaffold_78257__gene_177446	F045567	MVTEDVVHTSTHRVEDALLAVDGDILTPRDGTYIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTGIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSESGCVVERVVR
SRS022725_LANL_scaffold_80000	SRS022725_LANL_scaffold_80000__gene_180996	F105377	VRDFGELPLLTPEEAFERAWEEGGSAHPVFDRGYRVRGLNDWKAIETLLRQNDVSDITVASFGLRRFEEIFDVFAMLSERGWHLWQTAANVYVGGERKTVQAIRAHYRGD
SRS022725_LANL_scaffold_88178	SRS022725_LANL_scaffold_88178__gene_198110	F053092	MQSDQGLILCLTHALLVFGALILEPAEMEDPMDDHTVQLFGVLVAKELGIATHRIKADEHVPRDHIPFTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK
SRS022725_LANL_scaffold_95047	SRS022725_LANL_scaffold_95047__gene_212460	F085821	MSNIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYVVAQGYPTAENEKQFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDETYINAWNEASVNKTLSIIRSGETIASGKEDVVELAESLNDEYELNISLLDEYCRALLYTAETTESQQELVAEIQSHI
SRS022725_LANL_scaffold_97308	SRS022725_LANL_scaffold_97308__gene_217354	F084342	LGGYLAIPICRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE