3300034686: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_15_08-R1

Overview

Basic Information

• IMG/M Taxon OID: 3300034686
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0136119 | Gp0356207 | Ga0334891
• Sample Name: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_15_08-R1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 464365507
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1
Not Available	5
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Netherlands: Wageningen, Gelderland
• Coordinates
  • Lat. (^o): 51.9691
  • Long. (^o): 5.6654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005744	Metagenome / Metatranscriptome	391	Y
F054063	Metagenome / Metatranscriptome	140	N
F066219	Metagenome / Metatranscriptome	127	Y
F070092	Metagenome	123	N
F073228	Metagenome / Metatranscriptome	120	N
F074777	Metagenome / Metatranscriptome	119	Y
F075034	Metagenome / Metatranscriptome	119	Y
F080090	Metagenome / Metatranscriptome	115	Y
F089495	Metagenome / Metatranscriptome	109	N
F103499	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0334891_005705	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	8315
Ga0334891_013016	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	4401
Ga0334891_024766	Not Available	2669
Ga0334891_039259	All Organisms → Viruses → Predicted Viral	1848
Ga0334891_054311	Not Available	1423
Ga0334891_069338	All Organisms → cellular organisms → Archaea → Euryarchaeota	1165
Ga0334891_098687	Not Available	867
Ga0334891_104350	Not Available	827
Ga0334891_106563	Not Available	813

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0334891_005705	Ga0334891_005705_8193_8315	F080090	MQQGDGWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDI
Ga0334891_013016	Ga0334891_013016_454_726	F075034	VYRTVRGNKPACEHLPSEAGLPGRVDRVAACRSCGAPTASSDGICRDCADAMREERAAALGEGCRVHRVRYVEDLPVSVLEEMQAEWGRC
Ga0334891_024766	Ga0334891_024766_3_317	F074777	GEKWEFRSFYGYSQGDYCEVIYCKAYYSESHITEIGKFWLGCGTEFCIDGCYGYFVIDELRWEEGGKLRNYLAELYGCKPEELKIYLYAGEHIVTDYKLLERVV
Ga0334891_039259	Ga0334891_039259_2_529	F070092	MAINDRLKPVMELLETNKQKLGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIKKIEYSYHEPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADITWDYAYNKLKVDRPWENNPLYKELKSQHNKVSV
Ga0334891_054311	Ga0334891_054311_56_619	F089495	MGRPYLRKSHVAVRFYDGTGTTPYTLDITGYSDIPELPEPVIDVAAEPYVVGGNFNSIEEGDDAVTLPEFAITIDINDADVATGKYAIDQWFANHKEGTGTTALVSTNDGSAYLKKSIDGTTTSANLSTDYFTIGLKVLFDNGGSGKAFGKDFKYIRPIDAKFSTSGKAQVTIRGQILGAPTDITAL
Ga0334891_069338	Ga0334891_069338_106_555	F054063	MNAWLYGVENTANIFFDKPKLFYRRWGTIAIRPFIESWNDLGMDFQKGLSPFNTAKMFVDALVKAEFFNSADFEMAGDDINFTFKAINCPYKSHCSRLIDERKEIACLRAITLLGAMEYNKEGESLKYMYKFEFNKENPCLVSFEKFKD
Ga0334891_098687	Ga0334891_098687_3_434	F066219	MQSLLREAFLLEVKMKKLLVIVLLIALSSLSFANIIEFFESIPPVVKFGVGAGIALYGLSWAYPWFFDPLIVVWDTDSGAFCFGPFIVIDTYLWYEAPESSRNIVLNHEYVHYIQHAVYGPILSLSYPILAAYSTIKTGNQWDA
Ga0334891_104350	Ga0334891_104350_548_826	F073228	GILVEGVEGIDMAITIGDIMDANNSKYGEFLYRIVMVYPHNLEVDKTELARLIKINNNTLTFERKNGEKFRIDERDIEHMEIFKSPNYRGGI
Ga0334891_106563	Ga0334891_106563_157_309	F103499	LHDLIHDRIAMEGCVCEAGLRSRLIYTCDEYVPDEAILSPQDEIRRLVEE
Ga0334891_106563	Ga0334891_106563_422_781	F005744	MDEMFEIIKAGAPNGPPEQALYRIQQTYSDGSGGRLNVDWDGLLRLHEVIHDRIALEGRVCETCGTKGCHRPATWEIECRGVGVSGRLIYSCDEHAPDEAILSPQDEIRRLVENRNMEE