3300034627: Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2017.108B

Overview

Basic Information

• IMG/M Taxon OID: 3300034627
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129088 | Gp0344145 | Ga0316609
• Sample Name: Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2017.108B
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 231703601
• Sequencing Scaffolds: 9
• Novel Protein Genes: 11
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	1
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Sediments And Microbial Mats In Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lake → Sediment → Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → sinkhole → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Michigan
• Coordinates
  • Lat. (^o): 45.1993
  • Long. (^o): -83.3279
  • Alt. (m): N/A
  • Depth (m): 185

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002525	Metagenome / Metatranscriptome	552	Y
F016728	Metagenome / Metatranscriptome	245	Y
F020197	Metagenome / Metatranscriptome	225	Y
F044511	Metagenome / Metatranscriptome	154	Y
F045770	Metagenome / Metatranscriptome	152	Y
F054064	Metagenome / Metatranscriptome	140	Y
F057919	Metagenome / Metatranscriptome	135	Y
F069913	Metagenome / Metatranscriptome	123	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0316609_030534	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	974
Ga0316609_037259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	881
Ga0316609_037865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	874
Ga0316609_043688	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	813
Ga0316609_051436	Not Available	749
Ga0316609_070249	Not Available	637
Ga0316609_093137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	550
Ga0316609_099305	Not Available	532
Ga0316609_107114	Not Available	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0316609_007615	Ga0316609_007615_2_142	F044511	RAPDAGDSAPFSSSFLRLSLFPIGRRPAARPSAGNANRWQELALNL
Ga0316609_030534	Ga0316609_030534_94_261	F057919	MHEIFSLFGFFTFLTIAVQILSGVMLSFSLVPEPMLIPLVRDEEDLEDLYTDDFF
Ga0316609_037259	Ga0316609_037259_1_159	F016728	GWLTVCVTRVWVGVDNVWEQEKPEARKMLVNRAESHTSGARFVGWLCARLAD
Ga0316609_037865	Ga0316609_037865_731_844	F002525	VWAGVDSAWEQEKLEARKMLENAAESHTSGARFVGRF
Ga0316609_043688	Ga0316609_043688_3_152	F044511	GSGQQAGCLTKRAPDAGDSGAISSLFLRLSIFPVGRRSAARPSAGNANR
Ga0316609_051436	Ga0316609_051436_6_341	F054064	MIPQIKKENKVGIKDLVGKKMTKNVKFMGEDVKISKLSVSEVLRIQDSAKDLEKDEGKGFDILKTVITSAVEGGSDLTDQDFDNFPMDELSKLSNEIMKFSGIGGEDNKGK
Ga0316609_070249	Ga0316609_070249_3_413	F045770	YTEEFTLDNSAAQTVYKGQPMIIDQSEDTVYLRGFVDATVVVATDIFAGIAAEGPVAVATTDTETANKCKLWVFPTIVGFKSTVYTDADLGDTVYMSDSATISATAADNPMLGKLHRVLDGYAYVQISSPTICAGA
Ga0316609_093137	Ga0316609_093137_439_549	F002525	RVWAGVDSAWEQEKLKARKMLVNRADSHTSGARFVG
Ga0316609_095744	Ga0316609_095744_434_541	F044511	DAGDSGAIPSIFLRLIIFPVGRRPAARPSAGNANR
Ga0316609_099305	Ga0316609_099305_198_530	F069913	MTLEEYTQIEQDFSTSETDIKTFLGIKGISIHQYYYWKRKSRDLQEASSPTEGQFLPLNVITGGSIKPGNRGKNLKHPLITQGEIEIELRTPSGSELRIRGVMDSIMVSTI
Ga0316609_107114	Ga0316609_107114_1_234	F020197	MEQKKLPFSKGHTLRLTAMYMRKAIDVSIRKTFDRIAEYDSNQEKSREIFEALSILHGMRKQLDDFQLENKAEFSKQN