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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300033494 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0129088 | Gp0344148 | Ga0316612 |
| Sample Name | Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.226 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 272991327 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 17 |
| Associated Families | 15 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 7 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia | 1 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Flectobacillus → unclassified Flectobacillus → Flectobacillus sp. BAB-3569 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lake → Sediment → Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → sinkhole → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 45.1993 | Long. (o) | -83.3279 | Alt. (m) | N/A | Depth (m) | 185 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001506 | Metagenome / Metatranscriptome | 681 | Y |
| F007965 | Metagenome / Metatranscriptome | 341 | Y |
| F011397 | Metagenome / Metatranscriptome | 291 | Y |
| F014119 | Metagenome / Metatranscriptome | 265 | Y |
| F020177 | Metagenome / Metatranscriptome | 225 | Y |
| F023591 | Metagenome / Metatranscriptome | 209 | Y |
| F025749 | Metagenome | 200 | Y |
| F057876 | Metagenome / Metatranscriptome | 135 | Y |
| F058147 | Metagenome | 135 | Y |
| F064603 | Metagenome / Metatranscriptome | 128 | Y |
| F084884 | Metagenome / Metatranscriptome | 112 | Y |
| F087946 | Metagenome | 110 | Y |
| F088111 | Metagenome / Metatranscriptome | 109 | Y |
| F092108 | Metagenome / Metatranscriptome | 107 | Y |
| F102832 | Metagenome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0316612_1000321 | Not Available | 16030 | Open in IMG/M |
| Ga0316612_1000598 | Not Available | 10405 | Open in IMG/M |
| Ga0316612_1001161 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 7178 | Open in IMG/M |
| Ga0316612_1001345 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia | 6642 | Open in IMG/M |
| Ga0316612_1001715 | Not Available | 5878 | Open in IMG/M |
| Ga0316612_1001995 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 5420 | Open in IMG/M |
| Ga0316612_1006452 | All Organisms → Viruses → Predicted Viral | 2992 | Open in IMG/M |
| Ga0316612_1012194 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Flectobacillus → unclassified Flectobacillus → Flectobacillus sp. BAB-3569 | 2173 | Open in IMG/M |
| Ga0316612_1015258 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium | 1935 | Open in IMG/M |
| Ga0316612_1017867 | Not Available | 1785 | Open in IMG/M |
| Ga0316612_1019871 | Not Available | 1687 | Open in IMG/M |
| Ga0316612_1030674 | Not Available | 1330 | Open in IMG/M |
| Ga0316612_1048700 | Not Available | 1019 | Open in IMG/M |
| Ga0316612_1091426 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 682 | Open in IMG/M |
| Ga0316612_1091862 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium | 680 | Open in IMG/M |
| Ga0316612_1107406 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 613 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0316612_1000321 | Ga0316612_100032115 | F023591 | MSCSGGKSTKKGRYNKANNLKPPVSYTIDSKGNVKPKYN |
| Ga0316612_1000598 | Ga0316612_10005983 | F092108 | MGILRISAKCSDLCWTEYTDAKGNKTESDGYVPEGIGISSDGDCGDYVSLDIDMQTGQIQNWKPVSDARVIKAQKSA |
| Ga0316612_1001161 | Ga0316612_10011613 | F014119 | MKINRESISKIIKPALNVIIVVSIGTAMFQLGGIYQSSKKGVVKVKNPYSHAFSPEEISIAVNESNELIMIERSTGEYIVYSDKIGQTIFGMYANRIHQEATNAGK |
| Ga0316612_1001345 | Ga0316612_10013455 | F087946 | MLSKQRIPDLIVILVLGLFLTLLNYTGTIGVVSDYPFIFMLIMYFVGRAVTWYVINKHFEEDEGE |
| Ga0316612_1001715 | Ga0316612_10017154 | F025749 | MKKQMTIREIRRVLFETEKYTVIGADEMTNKESRDFLYAKDNQDENMNVIDNGSYLLIWK |
| Ga0316612_1001715 | Ga0316612_10017155 | F007965 | MEVKKGGKRKGSGRKKAEYETKTIAFRVRIEFVEPIKKMVKDYVS |
| Ga0316612_1001995 | Ga0316612_10019953 | F064603 | MTIKKFDYSKSTEDIFYKIIYPIYAKEFLFGSKYNNFAFIVAANFILNAPQWEYILEHWEQKESILTIENK |
| Ga0316612_1006452 | Ga0316612_10064524 | F057876 | MEGMRIRGNRETKVDKANLIEQIKLNKKNHVREYEKAILAYKEEALNQLSKEFKRVENGALDAKLDLITPINNAKNYDKIIEMFEWEVEDYVVLTQAEFNEYVQDETEFARQAKFSNTFYSNSI |
| Ga0316612_1012194 | Ga0316612_10121942 | F025749 | METRLTVREIRKILFDTDYYTVIGSVERSNKESRDYFYWLDDQDEIFNVINNGKYLLIWK |
| Ga0316612_1015258 | Ga0316612_10152583 | F020177 | DRLRGYVTELRVDARWILRKDEDDKPYGSLRIVSHPDLKPGYLRAIFTYVTTIRPKSREEKLQTIEDYQMEITELEVYSISEDIKTENKTYEAPYKELEELFGVKVFEK |
| Ga0316612_1017867 | Ga0316612_10178675 | F102832 | MMINTPPNPHLHKAVVSGSYYLVRYCGGSYDDYYSAVVFVTNKKSTAKKYCSKFNKALKKWKVYYEQFETDTFGMKWIADEHIEKHFDRWNGLKNITKCYYEDVSFR |
| Ga0316612_1019871 | Ga0316612_10198713 | F058147 | MQRQSIIVFIQGERIETYGNLKKCCECEGLKYHTLARLKFPIRINDVVIHKTLFK |
| Ga0316612_1030674 | Ga0316612_10306743 | F011397 | MKDFELLKRTYPVSHYERFCDGFDFIRKNSSEEERLEWGINLNDLQRVIKIGEKYIYQVAKEGKEFKTMCLCFKNYEIIRKNIFKLDDE |
| Ga0316612_1048700 | Ga0316612_10487003 | F007965 | MKKKKETRGGKRPLSGRKKADYETKTISFRVRVEFVEPIKKMVKDYVLDL |
| Ga0316612_1091426 | Ga0316612_10914261 | F088111 | SSYGFLLVNQQAYQNVFSENPTNGPTGYDHLTYSFSSPAGNSFFAILDPYYVNKDTVKEGLGGNIDSTQMSWLKNQVAKTTATHKFLFIHTPYYYVFSDTNELAEANQSFTNLWAFLDAKKFDIYACEHSHLFARRTIDSSILPNPPTTPPTPLWQNNVVQLLNGTCGADPSTGYIDPDFKASWNVHNDAQTFYFSVVDIKGSTVTVNSYSGSTGAYSVFDTFSVTR |
| Ga0316612_1091862 | Ga0316612_10918621 | F084884 | QSVHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGQLLAK |
| Ga0316612_1107406 | Ga0316612_11074062 | F001506 | MNRILYESRCRCKEEISIIPKRKLSARSEGKPLQYPNEMMSKTFQIKYEKKLSSLARFILNSFRNKYIYYAIDDILYLLKSNPVERESLLALLYSPVLSLHNNLCINFFDIWIHEVYINETSKVNKFLNNEYQNLEQFTYITIKFLYKTRVPVKKPDSLW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |