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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300031964 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0134627 | Gp0312999 | Ga0311373 |
| Sample Name | III_Palsa_N3 coassembly |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 4001244624 |
| Sequencing Scaffolds | 34 |
| Novel Protein Genes | 34 |
| Associated Families | 34 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1 |
| Not Available | 11 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 3 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46 | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 4 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Sweden: Abisko, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3535 | Long. (o) | 19.0473 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002482 | Metagenome / Metatranscriptome | 555 | Y |
| F004057 | Metagenome / Metatranscriptome | 455 | Y |
| F006204 | Metagenome / Metatranscriptome | 379 | Y |
| F015011 | Metagenome / Metatranscriptome | 258 | Y |
| F017934 | Metagenome / Metatranscriptome | 238 | Y |
| F020532 | Metagenome / Metatranscriptome | 223 | Y |
| F020735 | Metagenome / Metatranscriptome | 222 | Y |
| F021581 | Metagenome / Metatranscriptome | 218 | Y |
| F023459 | Metagenome / Metatranscriptome | 210 | Y |
| F023759 | Metagenome / Metatranscriptome | 209 | Y |
| F026549 | Metagenome / Metatranscriptome | 197 | Y |
| F029194 | Metagenome / Metatranscriptome | 189 | Y |
| F029202 | Metagenome / Metatranscriptome | 189 | Y |
| F029520 | Metagenome / Metatranscriptome | 188 | Y |
| F029692 | Metagenome / Metatranscriptome | 187 | Y |
| F030211 | Metagenome / Metatranscriptome | 186 | Y |
| F031334 | Metagenome | 182 | Y |
| F031735 | Metagenome / Metatranscriptome | 181 | Y |
| F033107 | Metagenome / Metatranscriptome | 178 | Y |
| F036903 | Metagenome / Metatranscriptome | 169 | Y |
| F039761 | Metagenome / Metatranscriptome | 163 | Y |
| F046142 | Metagenome / Metatranscriptome | 151 | Y |
| F051722 | Metagenome / Metatranscriptome | 143 | Y |
| F058302 | Metagenome / Metatranscriptome | 135 | Y |
| F061337 | Metagenome / Metatranscriptome | 132 | Y |
| F064942 | Metagenome / Metatranscriptome | 128 | Y |
| F080347 | Metagenome / Metatranscriptome | 115 | Y |
| F088394 | Metagenome / Metatranscriptome | 109 | N |
| F089567 | Metagenome / Metatranscriptome | 109 | Y |
| F092429 | Metagenome / Metatranscriptome | 107 | Y |
| F092527 | Metagenome / Metatranscriptome | 107 | Y |
| F093329 | Metagenome / Metatranscriptome | 106 | Y |
| F098183 | Metagenome / Metatranscriptome | 104 | Y |
| F101544 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0311373_10010405 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 14449 | Open in IMG/M |
| Ga0311373_10035665 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 6851 | Open in IMG/M |
| Ga0311373_10071175 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 4486 | Open in IMG/M |
| Ga0311373_10181871 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 2488 | Open in IMG/M |
| Ga0311373_10204922 | All Organisms → cellular organisms → Bacteria | 2305 | Open in IMG/M |
| Ga0311373_10293521 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1827 | Open in IMG/M |
| Ga0311373_10329882 | Not Available | 1694 | Open in IMG/M |
| Ga0311373_10354690 | Not Available | 1616 | Open in IMG/M |
| Ga0311373_10459634 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1362 | Open in IMG/M |
| Ga0311373_10492039 | Not Available | 1302 | Open in IMG/M |
| Ga0311373_10533797 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46 | 1234 | Open in IMG/M |
| Ga0311373_10586439 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1159 | Open in IMG/M |
| Ga0311373_10648307 | Not Available | 1084 | Open in IMG/M |
| Ga0311373_10892142 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 876 | Open in IMG/M |
| Ga0311373_11042638 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium | 789 | Open in IMG/M |
| Ga0311373_11048649 | All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium | 786 | Open in IMG/M |
| Ga0311373_11067615 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 777 | Open in IMG/M |
| Ga0311373_11167454 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 731 | Open in IMG/M |
| Ga0311373_11171377 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 730 | Open in IMG/M |
| Ga0311373_11180330 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 726 | Open in IMG/M |
| Ga0311373_11190612 | Not Available | 722 | Open in IMG/M |
| Ga0311373_11213251 | Not Available | 713 | Open in IMG/M |
| Ga0311373_11224234 | Not Available | 708 | Open in IMG/M |
| Ga0311373_11381890 | Not Available | 653 | Open in IMG/M |
| Ga0311373_11409663 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 644 | Open in IMG/M |
| Ga0311373_11476756 | Not Available | 625 | Open in IMG/M |
| Ga0311373_11495779 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 619 | Open in IMG/M |
| Ga0311373_11640500 | Not Available | 582 | Open in IMG/M |
| Ga0311373_11673206 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | 574 | Open in IMG/M |
| Ga0311373_11697952 | Not Available | 568 | Open in IMG/M |
| Ga0311373_11946338 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 518 | Open in IMG/M |
| Ga0311373_11973651 | All Organisms → cellular organisms → Bacteria | 513 | Open in IMG/M |
| Ga0311373_12031725 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli | 503 | Open in IMG/M |
| Ga0311373_12049827 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0311373_10010405 | Ga0311373_100104051 | F026549 | MFRSLVTRTVLPLLLAAGVVAYFGLPYIDRLLTEWFRSDVQLRA |
| Ga0311373_10035665 | Ga0311373_100356654 | F029692 | VLFGAVAVAAFWFAIQLCWSAVGKPWYSVAARVAGAVILIGLGVVMIFFTAFEG |
| Ga0311373_10071175 | Ga0311373_100711751 | F030211 | TCGRLDIIDTTSGTVTDSAVITDGYHDRMDFNVVGQLFIGSHDCTNIGNVSYPVGEVRGCLSIFNVANNSVFIPPDNGDVNGLQGFSTRTIEYVAQGGALRVYDTTTDALLITDFIPEGTIELVGYVGDVKAIDFF |
| Ga0311373_10181871 | Ga0311373_101818711 | F033107 | TIAYAALTRVNKVHTTRFHARPAAKPEAVQTWEGEGGGLPTGGPGAGVKVAPAAVTDPDLAHGGA |
| Ga0311373_10204922 | Ga0311373_102049221 | F092429 | GGTVEEGKATLNDPSRKTTVPVVFVSSDEEVIKIVESSPGAIGVVDVYNITSGVKVIKIDDKQPFDPGYVLKGR |
| Ga0311373_10293521 | Ga0311373_102935213 | F002482 | MAAEFTDFSVSQQRALFDLLVLAAYADGHLVTVEDGQLQELLVAMGIAEKSDRQHEFDAAVTRMRPAVQTIWKAKEQALLLANSFTARNQQKQVFAAIEQMMAADLHVSSWENTLLMELRMKFRL |
| Ga0311373_10329882 | Ga0311373_103298822 | F031735 | MLAEEQDVQEVEALSDEEVDELLVEEVSIDGMCGVY |
| Ga0311373_10354690 | Ga0311373_103546902 | F029520 | NLTESVASAEVELLNDDTAERLTRLDRDTEVDRLLEDLKSKRKLLTP |
| Ga0311373_10459634 | Ga0311373_104596341 | F023759 | ADALLHRTDKAALTKIRQQVLELCEAFPLYAERRARAQAEARV |
| Ga0311373_10492039 | Ga0311373_104920391 | F039761 | RRRARRMIRAERRTIRAEQADRSAWQSFIVALGSMLVALPVTAIVLKGSPGGAAIMLMAVIWVVVGIINVAYIMRKQATRE |
| Ga0311373_10533797 | Ga0311373_105337972 | F051722 | TAWIVVPINYFWRPEQDVNWARGPFFHEQHAMPGWAYLLVYLIVVTLCVYFPTHLFLNWLSRRWERPTLDFR |
| Ga0311373_10586439 | Ga0311373_105864392 | F006204 | MQTGPHDPRDIPILTVATPESVEVSLTFDAKAVHAAILTETLNLADSLLHQAAKDIEATLFERVFDRLRAQLPELVDRILREHAATQENAKDHG |
| Ga0311373_10648307 | Ga0311373_106483071 | F046142 | MKYSSFPVVALLAFAIAFTGCKKQEQCASGDTPEVCKGVQECFKSGTAVEVCREGERDAMKMTTNTSTPTSGAANALNYDSSKTAQKPAPKQPPKQ |
| Ga0311373_10892142 | Ga0311373_108921421 | F031334 | AEMVGDAQFFAVTERFKIASVTELPSLAALKQLVEDLESVANQQVA |
| Ga0311373_11042638 | Ga0311373_110426382 | F089567 | MSASETVQFQATPELRRQLEEGARSLNISLSAYILYLQTRTASGRDGGRLDRHVREVFGKHGELIRRLATIADGIR |
| Ga0311373_11048649 | Ga0311373_110486491 | F029194 | KMRASVQHFEQLTDTLHQATTDLGELLRGTQEAGRRLEIAVYVTIGVSLVQLFNLIFEIFRKR |
| Ga0311373_11067615 | Ga0311373_110676152 | F093329 | MGQSLASLDPIRDEPRTSGRRKAVIALAIGAFLLLAILVLQGSFNLKFISP |
| Ga0311373_11167454 | Ga0311373_111674541 | F029202 | MLDRSRVALRNYAEGMRFSTYPAFGAAGLGESALLGAASAPWQGAFSA |
| Ga0311373_11171377 | Ga0311373_111713771 | F023459 | MLVAEKTVVALSWVSVRDRLPFNGHECVLICRNPNSNELRRAIGCRLHGNWEIEDCALVNCDVRAWLKLPSTPSDI |
| Ga0311373_11180330 | Ga0311373_111803301 | F015011 | FVGDATATGIVDGLLPLWFALVKQHGGNRKVALRVVTEG |
| Ga0311373_11190612 | Ga0311373_111906121 | F061337 | MCQERIRLVADYRETTRTYADIVRKMTDLVGLGIESEVDLLRRSCRLSWDAAERARLALFRHEANHSCNRGDYRASAPAVGPPYA |
| Ga0311373_11213251 | Ga0311373_112132512 | F088394 | MSEAPKHLGLDGRARDKDGRIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLQETKFESLTQYVKHHGHQPLNQA |
| Ga0311373_11224234 | Ga0311373_112242342 | F017934 | MTETNTELQPRDLDEALRKRIIARAMAINTKLLARLATVADDLDVGGYRAAIGGLDGLEREIGTMRSFLLLLP |
| Ga0311373_11381890 | Ga0311373_113818902 | F020532 | MRQTQRNAPKKKLDYPEETSGSRLAAKNRKLASKLAPEEEAEHFRRGMAMIYGSQSKEITGTGH |
| Ga0311373_11409663 | Ga0311373_114096632 | F092527 | KHYPLRDFVSHRFPLRGVEAAMEKSIAPDSMKVIMEPWS |
| Ga0311373_11476756 | Ga0311373_114767563 | F058302 | GNVPAEVGANFTVIVALCPAVNVTGGVIPEILNPVPDTATAEIVALVAPVFSIVSVWLEVCPVVMFV |
| Ga0311373_11495779 | Ga0311373_114957792 | F101544 | MSLSPATAQALRHALVTAVVVPVTPLHADGSPDWDTY |
| Ga0311373_11640500 | Ga0311373_116405002 | F020735 | MTTAGAQNRSAGKDIAVYGCLVALAAIQFFIAYQDITASQMFVRMLIV |
| Ga0311373_11673206 | Ga0311373_116732061 | F004057 | LVAVVATLSKGYDLEYIWKQVDRGPARDAASYYLQASESGGPGN |
| Ga0311373_11697952 | Ga0311373_116979521 | F036903 | GKTKEALTKYNEALKYAPHWKQLQEAREAVAKQKT |
| Ga0311373_11946338 | Ga0311373_119463382 | F021581 | GEQIHSLEKDKLRSFRKSRESAMPKYGVDVLSDKDLEDIVAFLTSVGTK |
| Ga0311373_11973651 | Ga0311373_119736511 | F080347 | MATLSEKPFGPTLSRRQFVKAGGALVVGFSVVGPGILKGAPKPAAMKN |
| Ga0311373_12031725 | Ga0311373_120317251 | F064942 | SSGGIENKTGTVNGDVWTWLGESIFAGKLYHTRYIMKFVSADSYEYTDESGESESSMKVFVSGKETRVAATKPAKSQSTQ |
| Ga0311373_12049827 | Ga0311373_120498271 | F098183 | MSEPEIPQESNEVSESWQQTVQAVLGVALLIGAGAMFHYYAP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |