Metagenome / Metatranscriptome Family F088394

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F088394
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	77 residues
Representative Sequence	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAS
Number of Associated Samples	71
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.32 %
% of genes near scaffold ends (potentially truncated)	28.44 %
% of genes from short scaffolds (< 2000 bps)	80.73 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (66.055 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (35.780 % of family members)
Environment Ontology (ENVO)	Unclassified (38.532 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.055 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.21% β-sheet: 1.28% Coil/Unstructured: 70.51%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00445	Ribonuclease_T2	11.01
PF12811	BaxI_1	7.34
PF04338	DUF481	4.59
PF14522	Cytochrome_C7	2.75
PF03916	NrfD	0.92
PF07944	Glyco_hydro_127	0.92
PF00596	Aldolase_II	0.92
PF13247	Fer4_11	0.92
PF14026	DUF4242	0.92
PF03544	TonB_C	0.92
PF01244	Peptidase_M19	0.92
PF00701	DHDPS	0.92
PF08327	AHSA1	0.92
PF14224	DUF4331	0.92
PF16916	ZT_dimer	0.92
PF08808	RES	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3719	Ribonuclease I	Translation, ribosomal structure and biogenesis [J]	11.01
COG3137	Putative salt-induced outer membrane protein YdiY	Cell wall/membrane/envelope biogenesis [M]	4.59
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.83
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.92
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	0.92
COG3533	Beta-L-arabinofuranosidase, GH127 family	Carbohydrate transport and metabolism [G]	0.92
COG5654	Predicted toxin component of a toxin-antitoxin system, contains RES domain	Defense mechanisms [V]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.06 %
Unclassified	root	N/A	33.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.06 %
Unclassified	root	N/A	33.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.06 %
Unclassified	root	N/A	33.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.69 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	15.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.51 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	12.84 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.75 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.94 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	12.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	9.17 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.42 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.94 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12.84 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	9.17 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.94 %
Komagataeibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter	9.17 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.50 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	2.75 %
Candidatus Sulfotelmatomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas	2.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	1.83 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.94 %
Komagataeibacter xylinus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter → Komagataeibacter xylinus	9.17 %
Bradyrhizobium oligotrophicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum	3.67 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	2.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1.83 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	1.83 %
Granulicella tundricola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella tundricola	0.92 %
Acidobacteriaceae bacterium KBS 89	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	0.92 %
Bradyrhizobium cosmicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cosmicum	0.92 %
Bradyrhizobium canariense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	0.92 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10459824	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300001593\|JGI12635J15846_10467686	Not Available	749	Open in IMG/M
3300001593\|JGI12635J15846_10790827	Not Available	544	Open in IMG/M
3300002245\|JGIcombinedJ26739_100877544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cosmicum	779	Open in IMG/M
3300004080\|Ga0062385_10015058	All Organisms → cellular organisms → Bacteria	2762	Open in IMG/M
3300004082\|Ga0062384_100270897	All Organisms → cellular organisms → Bacteria → Proteobacteria	1040	Open in IMG/M
3300004092\|Ga0062389_100952529	Not Available	1042	Open in IMG/M
3300004092\|Ga0062389_104166162	Not Available	543	Open in IMG/M
3300004121\|Ga0058882_1349801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum	597	Open in IMG/M
3300004635\|Ga0062388_100102842	All Organisms → cellular organisms → Bacteria	2053	Open in IMG/M
3300004635\|Ga0062388_101438472	Not Available	694	Open in IMG/M
3300005591\|Ga0070761_10386301	Not Available	852	Open in IMG/M
3300005591\|Ga0070761_10855444	Not Available	574	Open in IMG/M
3300005602\|Ga0070762_10397118	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300006893\|Ga0073928_10000016	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	401248	Open in IMG/M
3300006893\|Ga0073928_10000036	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	304142	Open in IMG/M
3300009624\|Ga0116105_1137903	Not Available	638	Open in IMG/M
3300009628\|Ga0116125_1216263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum	549	Open in IMG/M
3300009665\|Ga0116135_1013093	All Organisms → cellular organisms → Bacteria	2920	Open in IMG/M
3300010049\|Ga0123356_11367411	Not Available	869	Open in IMG/M
3300010343\|Ga0074044_11021813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum	542	Open in IMG/M
3300011120\|Ga0150983_11559393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum	570	Open in IMG/M
3300014489\|Ga0182018_10025807	All Organisms → cellular organisms → Bacteria → Proteobacteria	3802	Open in IMG/M
3300014489\|Ga0182018_10029639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3491	Open in IMG/M
3300014495\|Ga0182015_10011920	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7753	Open in IMG/M
3300014495\|Ga0182015_10071056	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella tundricola	2469	Open in IMG/M
3300014495\|Ga0182015_10101830	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	1992	Open in IMG/M
3300014501\|Ga0182024_10079254	All Organisms → cellular organisms → Bacteria → Proteobacteria	4906	Open in IMG/M
3300014501\|Ga0182024_10336586	All Organisms → cellular organisms → Bacteria	1978	Open in IMG/M
3300014501\|Ga0182024_10465160	All Organisms → cellular organisms → Bacteria	1617	Open in IMG/M
3300014501\|Ga0182024_11560518	Not Available	751	Open in IMG/M
3300017948\|Ga0187847_10697432	Not Available	571	Open in IMG/M
3300018042\|Ga0187871_10337877	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300018042\|Ga0187871_10353698	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300018047\|Ga0187859_10871708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter → Komagataeibacter xylinus	519	Open in IMG/M
3300020580\|Ga0210403_11071243	Not Available	627	Open in IMG/M
3300020582\|Ga0210395_11404787	All Organisms → cellular organisms → Bacteria → Proteobacteria	509	Open in IMG/M
3300020583\|Ga0210401_10014796	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	7553	Open in IMG/M
3300021180\|Ga0210396_10504042	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1059	Open in IMG/M
3300021420\|Ga0210394_10075082	All Organisms → cellular organisms → Bacteria → Proteobacteria	2925	Open in IMG/M
3300021433\|Ga0210391_10734877	Not Available	773	Open in IMG/M
3300022529\|Ga0242668_1148530	Not Available	514	Open in IMG/M
3300022557\|Ga0212123_10000001	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5123848	Open in IMG/M
3300022557\|Ga0212123_10000031	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	455856	Open in IMG/M
3300025612\|Ga0208691_1109399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter → Komagataeibacter xylinus	622	Open in IMG/M
3300027171\|Ga0207947_1017883	Not Available	518	Open in IMG/M
3300027676\|Ga0209333_1059259	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300027692\|Ga0209530_1139375	Not Available	681	Open in IMG/M
3300027692\|Ga0209530_1142288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter → Komagataeibacter xylinus	673	Open in IMG/M
3300027767\|Ga0209655_10081815	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1074	Open in IMG/M
3300027767\|Ga0209655_10169558	Not Available	721	Open in IMG/M
3300027768\|Ga0209772_10075250	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300027879\|Ga0209169_10683776	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300027895\|Ga0209624_10065266	All Organisms → cellular organisms → Bacteria	2343	Open in IMG/M
3300027895\|Ga0209624_10594664	Not Available	734	Open in IMG/M
3300027908\|Ga0209006_10553028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter → Komagataeibacter xylinus	955	Open in IMG/M
3300027908\|Ga0209006_10583903	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300028731\|Ga0302301_1067581	Not Available	948	Open in IMG/M
3300028742\|Ga0302220_10003116	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11668	Open in IMG/M
3300028747\|Ga0302219_10215824	Not Available	741	Open in IMG/M
3300028773\|Ga0302234_10322592	Not Available	662	Open in IMG/M
3300028775\|Ga0302231_10407872	Not Available	573	Open in IMG/M
3300028808\|Ga0302228_10476669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter → Komagataeibacter xylinus	551	Open in IMG/M
3300029882\|Ga0311368_10963415	Not Available	566	Open in IMG/M
3300029910\|Ga0311369_10602235	Not Available	917	Open in IMG/M
3300029910\|Ga0311369_11487451	Not Available	508	Open in IMG/M
3300029943\|Ga0311340_10629780	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300029944\|Ga0311352_10127414	All Organisms → cellular organisms → Bacteria	2219	Open in IMG/M
3300029999\|Ga0311339_10152728	All Organisms → cellular organisms → Bacteria → Proteobacteria	2708	Open in IMG/M
3300029999\|Ga0311339_11758840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter → Komagataeibacter xylinus	540	Open in IMG/M
3300030043\|Ga0302306_10181590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	811	Open in IMG/M
3300030043\|Ga0302306_10342211	Not Available	573	Open in IMG/M
3300030053\|Ga0302177_10087215	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1824	Open in IMG/M
3300030058\|Ga0302179_10179698	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300030399\|Ga0311353_10512102	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1062	Open in IMG/M
3300030399\|Ga0311353_10518659	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	1054	Open in IMG/M
3300030399\|Ga0311353_11416662	Not Available	566	Open in IMG/M
3300030520\|Ga0311372_11478825	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300030520\|Ga0311372_11509888	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300030520\|Ga0311372_11887003	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300030580\|Ga0311355_10078120	All Organisms → cellular organisms → Bacteria → Proteobacteria	3763	Open in IMG/M
3300030580\|Ga0311355_10699433	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300030580\|Ga0311355_11112580	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300030580\|Ga0311355_11289966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter → Komagataeibacter xylinus	640	Open in IMG/M
3300030617\|Ga0311356_11568449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter → Komagataeibacter xylinus	593	Open in IMG/M
3300030618\|Ga0311354_10357738	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	1488	Open in IMG/M
3300030618\|Ga0311354_10758258	All Organisms → cellular organisms → Bacteria → Proteobacteria	921	Open in IMG/M
3300030940\|Ga0265740_1046922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	524	Open in IMG/M
3300031057\|Ga0170834_111553582	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300031231\|Ga0170824_121038739	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300031233\|Ga0302307_10619928	Not Available	545	Open in IMG/M
3300031234\|Ga0302325_10839844	All Organisms → cellular organisms → Bacteria	1288	Open in IMG/M
3300031234\|Ga0302325_11903807	Not Available	739	Open in IMG/M
3300031236\|Ga0302324_100941240	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300031236\|Ga0302324_102596679	Not Available	616	Open in IMG/M
3300031525\|Ga0302326_10854258	Not Available	1302	Open in IMG/M
3300031525\|Ga0302326_11434234	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	930	Open in IMG/M
3300031708\|Ga0310686_101018090	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2242	Open in IMG/M
3300031708\|Ga0310686_106726262	Not Available	672	Open in IMG/M
3300031708\|Ga0310686_107825852	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	656	Open in IMG/M
3300031708\|Ga0310686_109410628	Not Available	623	Open in IMG/M
3300031708\|Ga0310686_111436329	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2308	Open in IMG/M
3300031715\|Ga0307476_10221551	All Organisms → cellular organisms → Bacteria	1377	Open in IMG/M
3300031837\|Ga0302315_10539640	Not Available	630	Open in IMG/M
3300031964\|Ga0311373_11213251	Not Available	713	Open in IMG/M
3300032515\|Ga0348332_10580185	Not Available	936	Open in IMG/M
3300032515\|Ga0348332_12833526	Not Available	766	Open in IMG/M
3300032515\|Ga0348332_14003271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter → Komagataeibacter xylinus	601	Open in IMG/M
3300034163\|Ga0370515_0503767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter → Komagataeibacter xylinus	511	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.08%
Host-Associated	Host-Associated	0.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.82%
Aquatic	Environmental → Aquatic	19.27%
Arthropoda	Host-Associated → Arthropoda	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	41.28%
Peat	Environmental → Terrestrial → Peat	35.78%
Freshwater	Environmental → Aquatic → Freshwater	15.60%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.67%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.75%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	35.78%
Loam	Environmental → Terrestrial → Soil → Loam	16.51%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	15.60%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	14.68%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.09%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.67%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.75%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	35.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.51%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	11.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.17%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	8.26%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.50%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.67%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.67%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.83%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	35.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	12.84%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.50%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	4.59%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.67%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.67%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.67%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	3.67%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.67%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.92%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.92%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.92%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004121	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025612	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)	Environmental	Open in IMG/M
3300027171	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF039 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028731	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2	Environmental	Open in IMG/M
3300028742	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030940	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031837	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1	Environmental	Open in IMG/M
3300031964	III_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_104598241	3300001593	Forest Soil	PGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAN*
JGI12635J15846_104676862	3300001593	Forest Soil	MSNAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVGAN*
JGI12635J15846_107908272	3300001593	Forest Soil	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAN*
JGIcombinedJ26739_1008775441	3300002245	Forest Soil	MSDAPKNPGLDGRGREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAS*
Ga0062385_100150584	3300004080	Bog Forest Soil	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGKHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAN*
Ga0062384_1002708972	3300004082	Bog Forest Soil	MSDAPKNPGLDGRGREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLSQYVKHHGHQPVSAS*
Ga0062389_1009525292	3300004092	Bog Forest Soil	MSNAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETGFESLTQYVKHHGHQPVSAS*
Ga0062389_1041661621	3300004092	Bog Forest Soil	MSNAPKNTGLDGRAREKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAT*
Ga0058882_13498011	3300004121	Forest Soil	MSNDPKNPALDGRARDKSGQIDHKHPTTKIKHLREHYGRTFAPGWDGERTLGELLKESKFSSLSQYVKHHGIHEPATLG*
Ga0062388_1001028423	3300004635	Bog Forest Soil	MGPEGVGMSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGKHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAN*
Ga0062388_1014384721	3300004635	Bog Forest Soil	MSDAPKNPGLDGRARDKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLSQYIKHHGH
Ga0070761_103863012	3300005591	Soil	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHNFAPGWDGERTLGELLKETKFESLTQYVKHHGHQPVSVA*
Ga0070761_108554442	3300005591	Soil	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGKHFAPDWDGERTLGELLKETKFESLSQYVKHHGHQPVSES*
Ga0070762_103971182	3300005602	Soil	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVK
Ga0073928_100000168	3300006893	Iron-Sulfur Acid Spring	MSEAPKNPGLDGRARDKNGQIDHKHPTTKIKHLREHYGKHFAPDWDGERTLGELLKESKFESLTQYVKHHGHQPVS*
Ga0073928_10000036144	3300006893	Iron-Sulfur Acid Spring	MSEAPKHPGLDGRARDKDGRIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLQEAKFESLTQYVKHHGHQPLNQA*
Ga0116105_11379031	3300009624	Peatland	MSNPPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAS*
Ga0116125_12162631	3300009628	Peatland	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAS*
Ga0116135_10130931	3300009665	Peatland	MSDAPKNPGLDGRAREKSGQIEHKHPTTKIKHLRVHYGVHFAPGWDGDSTLGELLKETKFESLTQYVKHHGHHPEGQTE*
Ga0123356_113674112	3300010049	Termite Gut	MSDAPNKTGLDGRRRGESGQIDHKQPSTKIKHLREHYGQHFAAGWDGERTLGELLRETNFSSLTQYVKHHGHKEQPQTVSPSSPSPGPSATPRAL*
Ga0074044_110218131	3300010343	Bog Forest Soil	MGPEGVGMSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGKHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQTVSTT*
Ga0150983_115593931	3300011120	Forest Soil	MSPEGVDMSDAPKNPGLDGRGREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAS*
Ga0182018_100258073	3300014489	Palsa	MSDAPKNPGLDGRAREKNGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAT*
Ga0182018_100296391	3300014489	Palsa	MSNAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSQT*
Ga0182015_100119203	3300014495	Palsa	MSDAPKNPGLDGRAREKNGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYIKHHGHQPVSAS*
Ga0182015_100710561	3300014495	Palsa	MSNAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYV
Ga0182015_101018302	3300014495	Palsa	MRGKGGNMSEAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGKHFAPDWDGERTLGELLKESKFESLTQYVKHHGHQPAS*
Ga0182024_100792541	3300014501	Permafrost	MSNAPKNPGLDGRAREKSGQIDHKHTTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAN*
Ga0182024_103365862	3300014501	Permafrost	MSEAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGKHFAPDWDGERTLGELLKESKFESLTQYVKHHGHQPAS*
Ga0182024_104651601	3300014501	Permafrost	MSDAPKNPGLDGRAREKSGQMDHKHPTTKIKHLREHYGQHFAPDWDGERTLCELLKETKFESLTQYVKHHGHQPVSQT*
Ga0182024_115605181	3300014501	Permafrost	MSDAPKNPGLDGRAREKSGRIDHKHPTTKIKHLREHYGQHFAPGWDGERTLGELLKETKFESLTQYVKHHGHQPVSQT*
Ga0187847_106974322	3300017948	Peatland	MSNAPKNPGLDGRAREKSGQIDHKHPTTKIKRLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAS
Ga0187871_103378771	3300018042	Peatland	MSNPPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAS
Ga0187871_103536981	3300018042	Peatland	MSNAPKHPGLDGRAREKSGQIEHKHPTTKIKHLRVHYGSLFAPGWDGDSTLGELLKETKFESLTQYVKHHGHQPVSQT
Ga0187859_108717081	3300018047	Peatland	MSNAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAN
Ga0210403_110712431	3300020580	Soil	MSDTPKNPGLDGRAREKSGQIEHKHPTTKIKHLREHYGKHFANGWDGERTLGELLSETKFESLSQYVKHHGHLPVS
Ga0210395_114047871	3300020582	Soil	MSNAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAS
Ga0210401_100147963	3300020583	Soil	MSNPPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETGFESLSQYVKHHGHQPVSPS
Ga0210396_105040422	3300021180	Soil	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGQHFVPDWDGERTLGELLKETKFESLSQYVKHHGHQPVSAT
Ga0210394_100750822	3300021420	Soil	MSDAPKNPGLDGRGREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLSQYVKHHGHQPVSAT
Ga0210391_107348772	3300021433	Soil	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGKHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAN
Ga0242668_11485301	3300022529	Soil	DGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETGFESLSQYVKHHGHQPVSPS
Ga0212123_100000012578	3300022557	Iron-Sulfur Acid Spring	MSEAPKNPGLDGRARDKNGQIDHKHPTTKIKHLREHYGKHFAPDWDGERTLGELLKESKFESLTQYVKHHGHQPVS
Ga0212123_10000031127	3300022557	Iron-Sulfur Acid Spring	MSEAPKHPGLDGRARDKDGRIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLQEAKFESLTQYVKHHGHQPLNQA
Ga0208691_11093991	3300025612	Peatland	MSDAPKNPGLDGRAREKSGQIEHKHPTTKIKHLRVHYGVHFAPGWDGDSTLGELLKETKFESLTQYVKHHGHHPEGQTE
Ga0207947_10178831	3300027171	Forest Soil	MSDAPKNPGLDGRGREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLSQYVKHHGHQPVSAS
Ga0209333_10592592	3300027676	Forest Soil	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAN
Ga0209530_11393752	3300027692	Forest Soil	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAN
Ga0209530_11422881	3300027692	Forest Soil	MSNAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVGAN
Ga0209655_100818152	3300027767	Bog Forest Soil	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGKHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSVA
Ga0209655_101695581	3300027767	Bog Forest Soil	MSDSPKNPGLDGRAREKDGQIDHKHPTTKIKHLREHYGKHFAADWDGERTLGELLKESKFESLTQYVKHHGHHPTA
Ga0209772_100752501	3300027768	Bog Forest Soil	SCMSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLSQYVKHHGHQPVSAN
Ga0209169_106837761	3300027879	Soil	MSDAPKNPGLDGRGREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGH
Ga0209624_100652663	3300027895	Forest Soil	MSDAPKNPGLDGRGREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAS
Ga0209624_105946641	3300027895	Forest Soil	MSNAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSATN
Ga0209006_105530281	3300027908	Forest Soil	MSHAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLSQYVKHHGHQPVSES
Ga0209006_105839032	3300027908	Forest Soil	MSNPPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAS
Ga0302301_10675811	3300028731	Palsa	MSNAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSQT
Ga0302220_100031163	3300028742	Palsa	MSETPKNPGLDGRARDKSGQIDHKHPTTKIKHLREHYGKHFAPDWDGERTLGELLKESKFESLTQYVKHHGHQPVG
Ga0302219_102158242	3300028747	Palsa	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHNFAPGWDGERTLGELLAETKFESLTQYVKHHGHQPVSVA
Ga0302234_103225921	3300028773	Palsa	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGRHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAG
Ga0302231_104078722	3300028775	Palsa	PKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGKHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAN
Ga0302228_104766691	3300028808	Palsa	MSDAPKNPGLDGRAREKNGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLSQYIKHHGHQPVSVS
Ga0311368_109634152	3300029882	Palsa	MSDAPKNPGLDGRGREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSTT
Ga0311369_106022352	3300029910	Palsa	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHNFAPGWDGERTLGELLAETKFESLTQYVKHHGHQPV
Ga0311369_114874511	3300029910	Palsa	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHNFAPGWDGERTLGELLKETKFESLTQYVKHHG
Ga0311340_106297801	3300029943	Palsa	MGNPPKNPGLDGRAREKSGQIEHKHPTTKIKHLRVHYGSLFAPGWDGDSTLGELLKETKFESLTQYVKHHGHHVESQTE
Ga0311352_101274142	3300029944	Palsa	MSNAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAN
Ga0311339_101527283	3300029999	Palsa	MGPEGVGMSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGKHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAN
Ga0311339_117588401	3300029999	Palsa	MSDAPKNPGLDGRGREKSGQIDHKHPTTKIKHLREHYGQHFAPGWDGERTLGELLKESKFESLTQYVKHHGHQPVSAT
Ga0302306_101815902	3300030043	Palsa	MSEAPKHPGLDGRARDKDGRIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLQETKFESLTQYVKHHGHQPLNQA
Ga0302306_103422111	3300030043	Palsa	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLSQYVKHHGHQPVSAS
Ga0302177_100872151	3300030053	Palsa	PGLDGRAREKNGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLSQYVKHHGHQPVSAT
Ga0302179_101796982	3300030058	Palsa	MSDAPKNPGLDGRAREKNGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLSQYVKHHGHQPVSAT
Ga0311353_105121022	3300030399	Palsa	MSNAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAS
Ga0311353_105186591	3300030399	Palsa	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIQHLREHYGHHFAPDWDGERTLGELLKETKFESLSQYVKHHGHQPVSAS
Ga0311353_114166621	3300030399	Palsa	AAVNLGKSFLWKDGVGMGNPPKNPGLDGRAREKSGQIEHKHPTTKIKHLRVHYGSLFAPGWDGDSTLGELLKETKFESLTQYVKHHGHHPEGQTE
Ga0311372_114788252	3300030520	Palsa	PKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHNFAPGWDGERTLGELLAETKFESLTQYVKHHGHQPVSVA
Ga0311372_115098882	3300030520	Palsa	MSEAPKNPGLDGRARDKNGQIDHKHPTTKIKHLREHYGKHFAPDWDGEKTLGELLKASKFESLSQYIKHHGHQPVS
Ga0311372_118870031	3300030520	Palsa	SDAPKNPGLDGRAREKNGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLSQYIKHHGHQPVSVS
Ga0311355_100781205	3300030580	Palsa	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQP
Ga0311355_106994331	3300030580	Palsa	MSEAPKNPGLDGRARDKNGQIDHKHPTTKIKHLREHYGKHFAPDWDGEKTLGELLKASKFESLSQYIKHHGHQP
Ga0311355_111125802	3300030580	Palsa	MSNPPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAN
Ga0311355_112899661	3300030580	Palsa	MSDAPKNPGLDGRAREKSGQIEHKHPTTKIKHLRVHYGVHFAPGWDGDSTLGELLKETKFESLTQYVKHHGHHVESQTE
Ga0311356_115684491	3300030617	Palsa	MSDAPKNPGLDGRAREKSGQIEHKHPTTKIKHLRVHYGVHFAPGWDGDSTLGELLKETKFESLTQYVKHHGHHTEGQTE
Ga0311354_103577383	3300030618	Palsa	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGH
Ga0311354_107582581	3300030618	Palsa	MSDAPKNPGLDGRAREKNGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLSQYIKHHGHQ
Ga0265740_10469221	3300030940	Soil	MSDAPKNPGLDGRAREKSGRIDHKHPTTKIKHLREHYGQHFAPDWDGELTLGELLKETKFESLTQYVKH
Ga0170834_1115535822	3300031057	Forest Soil	MSDTPENPGLDGRAREKSGQIEHKHPTTKIKHLREHYGKHFANGWDGERTLGELLSETKFESLSQYVKHHGHLPVS
Ga0170824_1210387392	3300031231	Forest Soil	MSDTPENPGLDGRAREKSGQIEHKHPTTKIKHLREHYGKHFANGWDGERTLGELLSETKFESLTQYVKHHGHLP
Ga0302307_106199282	3300031233	Palsa	MSDAPKNPGLDGRAREKNGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHG
Ga0302325_108398443	3300031234	Palsa	AGMSNPPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHNFAPGWDGERTLGELLKETKFESLTQYVKHHGHQPVSVA
Ga0302325_119038072	3300031234	Palsa	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSQT
Ga0302324_1009412401	3300031236	Palsa	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHNFAPGWDGERTLGELLKETKFESLTQYV
Ga0302324_1025966791	3300031236	Palsa	MSDAPKNPGLDGRAREKNGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLSQYIKHHGHQPVSAT
Ga0302326_108542581	3300031525	Palsa	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHNFAPGWDGERTLGELLKETKFESLTQYVKHHGHQPVSVA
Ga0302326_114342342	3300031525	Palsa	MSDAPKNPGLDGRAREKNGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAT
Ga0310686_1010180901	3300031708	Soil	REKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVCAN
Ga0310686_1067262622	3300031708	Soil	MSNAPENPGLDGRAREKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSTN
Ga0310686_1078258521	3300031708	Soil	NPGLDGRGREKSGQIDHKHPTTKIKHLREHYGQHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSTS
Ga0310686_1094106281	3300031708	Soil	NPGLDGRAREKSGQIEHKHPTTKIKHLRAHYGMHFAPGWDGDSTLGELLKETKFESLTQYVKHHGHHLESQTE
Ga0310686_1114363292	3300031708	Soil	MSDNPEKAGLDGRGREKSGRIDHKHPTTKIKHLREHYGAYFAQGWDGERTLGELLSETKFESLTQYVKHHGHQPTS
Ga0307476_102215512	3300031715	Hardwood Forest Soil	MSNAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVTAS
Ga0302315_105396402	3300031837	Palsa	MSEAPKHLGLDGRARDKDGRIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLQETKFESLTQYVKHHGHQPLN
Ga0311373_112132512	3300031964	Palsa	MSEAPKHLGLDGRARDKDGRIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLQETKFESLTQYVKHHGHQPLNQA
Ga0348332_105801851	3300032515	Plant Litter	MSNPPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETGFESLTQYVKHHGHQPVSTS
Ga0348332_128335262	3300032515	Plant Litter	MSDAPKNPGLDGRAREKNGQIDHKHPTTKIKHLREHYGHNFAPGWDGERTLGELLAETKFESLTQYVKHHGHQPVSVA
Ga0348332_140032711	3300032515	Plant Litter	MSDAPKNPGLDGRAREKSGQIDHKHPTTKIKHLREHYGHHFAPDWDGERTLGELLKETKFESLTQYVKHHGHQPVSAS
Ga0370515_0503767_147_386	3300034163	Untreated Peat Soil	MGNAPKNPGLDGRAREKSGQIEHKYPTTKIKHLRVHYGSLFAPGWDGDSTLGELLKETKFESLTQYVKHHGHHVESQTE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088394

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences