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Sample 3300031678
3300031678: Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE6 (Metagenome Metatranscriptome)
Overview
| Basic Information |
|---|
| IMG/M Taxon OID | 3300031678 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0128948 | Gp0324304 | Ga0310114 |
| Sample Name | Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE6 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
|---|
| Total Genome Size | 37020025 |
| Sequencing Scaffolds | 47 |
| Novel Protein Genes | 50 |
| Associated Families | 46 |
| Dataset Phylogeny |
|---|
| Taxonomy Groups | Number of Scaffolds |
|---|
| Not Available | 43 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis | 2 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
|---|
| Name | Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Alternative Ecosystem Assignments |
|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information |
|---|
| Location | Norway: Oslo |
| Coordinates | Lat. (o) | 59.997 | Long. (o) | 10.7902 | Alt. (m) | N/A | Depth (m) | N/A |
| Location on Map |
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Associated Families
Associated Scaffolds
Sequences
