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Sample 3300031145
3300031145: Sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States - P4_Day56_Rep1
Overview
Basic Information
IMG/M Taxon OID 3300031145 Open in IMG/M GOLD Reference Gs0135754 | Gp0325890 | Ga0310821 Sample Name Sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States - P4_Day56_Rep1 Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 108478486 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales 2 All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Lab Enriched Sorghum-Adapted Microbial Communities From Joint Bioenergy Institute, Emeryville, California, United States Type Engineered Taxonomy Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Growth Medium → Lab Enriched Sorghum-Adapted Microbial Communities From Joint Bioenergy Institute, Emeryville, California, United States
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Unclassified
Location Information
Location USA: Emeryville, California Coordinates Lat. (o ) 37.8406 Long. (o ) -122.2901 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F029834 Metagenome 187 Y F064527 Metagenome / Metatranscriptome 128 Y F097552 Metagenome 104 Y F098955 Metagenome / Metatranscriptome 103 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0310821_100020 All Organisms → cellular organisms → Bacteria 360259 Open in IMG/M Ga0310821_100024 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales 325502 Open in IMG/M Ga0310821_100026 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales 317340 Open in IMG/M Ga0310821_100311 All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae 27602 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0310821_100020 Ga0310821_100020306 F098955 MDPSAIPVFLAGPFPVLHTARIDEIESEVELDVGLIIGGLPTILAASTFPLDETWSRVEAALASGDAKLGVAGVPHEEESVIGKHEVFPSAYVGLECANGERLILAHIRGSDPAQNAEAYAREVIGALLNGQTPAELGELIED Ga0310821_100024 Ga0310821_10002492 F029834 MKIPRSCRRSTAYHSVVASSVPWIRSHGRGTCPSSVAMRASTSWRWVAT Ga0310821_100026 Ga0310821_100026248 F064527 MSTMRDPADRVRTLLLRADNVLKNEGDPADRARRARAALEEARSVAAGGGVDPRVVELIERRLTALEAGGPG Ga0310821_100311 Ga0310821_1003111 F097552 EIDPLDYIDRKEILEHLEAVIDKCDDVANELQAVTAKHV
