Sample 3300031048

Basic Information
IMG/M Taxon OID	3300031048 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0068071 \| Gp0115367 \| Ga0074025
Sample Name	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 13 (Eukaryote Community Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 13 (Eukaryote Community Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	177327234
Sequencing Scaffolds	25
Novel Protein Genes	25
Associated Families	19

Dataset Contents

Total Genome Size

177327234

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Mycenaceae → Mycena	3
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	2
All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Mycenaceae → Mycena → Mycena venus	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1
All Organisms → cellular organisms → Eukaryota	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Mycenaceae → Mycena

All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia

All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1

All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea

All Organisms → cellular organisms → Eukaryota

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Ecosystem Assignment (GOLD)

Name

Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → forest floor → wood
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → forest floor → wood

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	Sweden: Dalarna County
Coordinates	Lat. (^o)	60.97	Long. (^o)	15.87	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Sweden: Dalarna County

Coordinates

Lat. (^o)

60.97

Long. (^o)

15.87

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000358	Metagenome / Metatranscriptome	1237	Y
F010295	Metagenome / Metatranscriptome	305	Y
F022801	Metagenome / Metatranscriptome	212	Y
F033655	Metagenome / Metatranscriptome	176	Y
F037234	Metagenome / Metatranscriptome	168	Y
F043718	Metagenome / Metatranscriptome	155	Y
F044225	Metagenome / Metatranscriptome	154	Y
F047414	Metagenome / Metatranscriptome	149	Y
F050101	Metagenome / Metatranscriptome	145	N
F054554	Metagenome / Metatranscriptome	139	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0074025_1000181	Not Available	595	Open in IMG/M
Ga0074025_1004873	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Mycenaceae → Mycena	727	Open in IMG/M
Ga0074025_1011335	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	800	Open in IMG/M
Ga0074025_1012435	Not Available	512	Open in IMG/M
Ga0074025_1016605	Not Available	612	Open in IMG/M
Ga0074025_1019698	Not Available	611	Open in IMG/M
Ga0074025_1029351	Not Available	697	Open in IMG/M
Ga0074025_1029902	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Mycenaceae → Mycena	638	Open in IMG/M
Ga0074025_1052719	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Mycenaceae → Mycena	525	Open in IMG/M
Ga0074025_1057341	All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	1129	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074025_1000181	Ga0074025_10001811	F043718	FLCATLAISTALPINLGGILGGVTGVLDDVLGNVEGVVSGLTSTVSQLLQKVTNLLKIPSGTNPLSFLQDLITKLEGVLSQLLGGAGSGSEIDDLTSGLPIDVNQILAQLTQILNIPKGVNVLTFVQSLLSQLEAILQQVLIIVSQLLKALLGGNLVGDLLGSVNDLKFALLLQKLVGTLTQIVDALTKVNGL
Ga0074025_1004873	Ga0074025_10048731	F022801	MSAKKSAIQRTSQAVIGMQLMAMRPPHSTSGASQVTVVLPQLFPTTVMGLQLRPMGTSRPVKSRPTRAATAEAPALVDGTTLLQHWFDVGGETGGVVVGVAAAR
Ga0074025_1011335	Ga0074025_10113351	F064333	AAVKPGWAAMRKGVEVVRPKVEPVIREQLEPIFKLENEIVGKMRESVMSVLEPLLKEHVQPHLGKIVNIIKSPMREAYGDAIGLFDEKISKWEPKGEFEKSFHDLDYFSRSYWQLHPALKKVDDMYEPLWLLREIFTDIYPWSLIWKGHDSVYRHVDNAVYTWEQAMLKERNPELAEPIKRDVIIKYRHDTDIAMMTYYMKILKTIIMPPFEALVHPVAKHIIEPLAEAIPEPFREFIDIKQMFEDLYTGIVEDSINVVLRADGPD
Ga0074025_1012435	Ga0074025_10124351	F043718	FFLCATLAISTALPINLGGILGGVTGVLDDVLGNVEDVVNGLTSTVSQLLQKVTTLLKIPSGTNPLSFLQDLITKLEGVLSQLLGGAGSGAEIDDLTSGLPIDVNQILAQLTQILNIPKGVNVLSFVQSLLSQLEAILQQVLLIVSQLLKALLGGNLVGDLLGSVNDLKF
Ga0074025_1016605	Ga0074025_10166051	F043718	FFLCATLAISTALPINLGGILGGVTGVLDDVLGNVEDVVNGLTSTVSQLLQKVVTILKIPSGTNPLSFLQDLITKLEGVLSQLLGSVGSGAEIDELTSGLPIDVNQILAQLTQILNIPKGVNVLTFVQSLLSQLEAILQQVLLIVSQLLKALLGGNLVGDLLGSVNDLKFALLLQKLVGTLTQIVDALTKVNGL
Ga0074025_1019698	Ga0074025_10196981	F044225	KDYVKDQRSYATQAADYIHDKVDEVVGGVKSKVGLADEAVRHKKEELSEEARHAAAVAAEEAKHAATEAKYSDHTGTAKEKLHDAKRTIKQKAAEFADNHL
Ga0074025_1029351	Ga0074025_10293511	F056224	MSKVQYVAEEENYSERVATQLPSPQSSSEYNYDLTNTISYNEDETLFFTQMQRCGSFLIPVIENDSHVDDAINQVANYFVESQALGVHSDIDGFFAGNNFECKDAKLEQLNQRKAYLEMALANTLQEMNYL
Ga0074025_1029902	Ga0074025_10299021	F022801	MQLIAMRPPHSFSGASQVTVVEPQLFPMTVMGEQLNPTSTRTPVRSRPRRAATAEAAELLAGTTLAQHWLEVGGVTGGGGVPFGMAAARVMSTEATTTESLENIFV
Ga0074025_1052719	Ga0074025_10527191	F022801	MGMQLMAMRPPHSLSGASQVTVVDPQLFPATVMGLQLNPTGTSRPVRSRPRRAATAEAAELEEGTTLLQHWGELGVVTGGGGVPLGMAAARVMSTEAITTESLENMFV
Ga0074025_1057341	Ga0074025_10573412	F097372	MTENSTINIIKNILAQCNSTVISIGHTEGHFLSSKQLVVLKECVDDLTDLESVADIDTPSSSQITEASTEEDAVRARRLQLAREIRNKQLQLASTSAANRSEINLDIGKLLSERARLDKLIKQFDTIAIV
Ga0074025_1077098	Ga0074025_10770981	F068861	GAVQLKTSTTLASTFGKVTRYEPWNNANARELLKHHPIAVWEHLDVRLAPRPGIYGRMCTFYGGWAAAGVVTPSTVEEMVSLHDAIDVTYGGTGDPGTIRVQVSCNFDDTMKDLFKGPDNENSRPVFFYCFTETNVIDKPADTDRFMLTFKGKYTLHGRY
Ga0074025_1104006	Ga0074025_11040061	F000358	IYPPEDGRSCIPPEKLEKAYQKGLIQRPANIGQDEDLDDDMDSKIDQSIKDVWAYYDKKGKGFLTKSEAESFFNDAFEVLALRKGRKPKDLLGPNVSKGQAVSQSIQKLAKGSDRVDFSSFEEFINMSDMDEALAIFTGQTGPIDVKNNVQMVDTNKLSAQARADAGPKPIYRDYPDD
Ga0074025_1175142	Ga0074025_11751421	F054554	KMLGKLKKGMGEVKASADIETEYLMAKNKNNFDHPAENGVRIKAYLDSFGAADDFVDRIKSWVDKYQDLVSSELKLIEKMNASAQLASISTIFTTFTAAQQNVVQLRQQQLGKVIEYIQTPAKKYISDQTPIKQKIDQANKAWIELRYWRKKGGSHSADEKEAQLAYEAHIEQLFKLFDFSIDAQLAQWVKYFADFEVEFFTNAAGVAPRV
Ga0074025_1226134	Ga0074025_12261341	F083663	FLFVCVLLCTSGFAYSQTPPAKPVWPDQFIAVFGLNINSSAVKNETSIFYSNWEVKAQLIDYPTKCIPFNDAAVTQACKIWFLPAGITISIPAQKICCMWFPGLGAVAPDFLAAFNYSGTIEGAADQYGVMHQSYLWEGSGFEYWTDVKNGDDIQFRDGPGDTFWNFGSFIASPQDPKLFDLPADCAADCPSSIRQDTSMLRQVRPFSLL
Ga0074025_1227218	Ga0074025_12272181	F050101	EGSRLVLCDQEGNVQTIDSRLASGDYNLFVSDFVADVRKEINITYNENQSVILIDPEASADEIKYLLCSSVGISLSTQIQLHDNNGRICPISSTLPSGHYTLVVPEVITNLNTVRTLSQESVLVLGGFALGVVVTIGVTSLFRRS
Ga0074025_1254436	Ga0074025_12544361	F104185	NVIKVWKYDSEKKKVEQYKTINTKGSYPDCIVPNEDESQLLFTSRDKFLEMYDFNTEKTSLHNVSPHITKTNALVYLENMGKISVCDYTSGKICILH
Ga0074025_1271625	Ga0074025_12716251	F059586	FPLRPSMKFTIAIASLLASVVSAVSLQARQYNDGQLLSPAAGATVASGSEVTIQYHVYDSLSAGTKYILVGFEYSPDDGDHTTYPVGNLSLSSPGSSGLVIKSPVTAPGPGSYNLVIYDVRTAGVAQTLYSVMTVNQTITVT
Ga0074025_1273550	Ga0074025_12735501	F047414	QENRLPNGFLQFPKKDAGMGMGYDSRMSHSFNKDLSPRMHRDNLILSPLFASNNHGGGFFNNFTPRYFSNMSHNNEGNKLGPDDFLMRPSPTHMDMDHSRFDKAMESLKMEMRNNTAPLMGDHHHQQGLNLDIDLIDDSYLHAPLTKSPNIQFSGSQPTSKCSFKKFGEWSLSPNASYLQRKKF
Ga0074025_1324241	Ga0074025_13242411	F080696	LGLLESLDLLDDSTTQRIDELAGLGDKLGELVSMVELGNEISEVGGRGFLIDDFNDLLSDGLDLLVLSVAGLSSLSGLLTSESDDEDSEDISVLGLDLTVSINEGLPLSDELAELVSGHIHSVEVSKAGLTLDVFNAELDLSPGISVAVQISERGFNDSSLKSIRSDLCSGGSSYAGLSDDSVSEGSRGLDIVPFLSDEGILDLLLLALLLSELLVFTNS
Ga0074025_1328185	Ga0074025_13281851	F037234	MLREIDYEKMRKYLELDPETSDLTIIRIIKVRTGYRCKDIRRIMVS
Ga0074025_1328867	Ga0074025_13288671	F033655	MSLLLLMGLLLGSGSFNNETRKVSLADSLEHFLSILSNSNSVDVDLRLLRNVVQSSFSFLFLDLEGDTSDGSSLDTLHQVSSETSNLISHSLGGENSDITQDDLVEMEVVGELTVVLFDQNLS
Ga0074025_1334758	Ga0074025_13347581	F010295	LKALSSEGVLSETEVVGLLGSSKGSEFGLMVSKGSSEGSSLSVTKVGGVVFALNTFSDLFSVSLVDDGQVLSNGLSDNLDFAELGGGGATSDLEGSETVKFLLVLFESLDEFVVSGGSKLENSELLVGHLMTWLCCALC
Ga0074025_1361963	Ga0074025_13619631	F064333	ENEIIGKMRESVMSVLEPLLKEHVTPHLGKVIGIIKSPMREAYADAANIFDEKISKWQPNPEMEKSFRDLDYFARSYWQLHPALRKVDDMYEPLWVLREIFSDIYPWSLIWKGHDSVYKHVDNAVYTWEQAMLKERNPELAEPIKRDVIIKYRHDTDIAVMNYYAKILKLIIMPPFEAAVHPVAKHIIEPLADSIPGPLKEFIDIKQMFEDLYTGIVSDSINVVLRADGPDDAFRSIAITGT
Ga0074025_1368108	Ga0074025_13681081	F043718	TALPINLGGILGGVTGVLDDVLGNVEGVVSGLTSTVSQLLQKVTTLLKIPSGTNPLSFLQDLITKLEGVLSQLLGGAGSGSEIDDLTSGLPIDVNQILAQLTQILNIPKGVNVLTFVQSLLSQLEAILQQVLLIVSQLLKALLGGNLVGDLLGSVNDLKFALLLQKLVGTLTQIVDALTKVNGL
Ga0074025_1369603	Ga0074025_13696031	F076785	LFCFQAIQKLFFSEEKFLLFFFLSNCLHQSLNSLDLLHDGLAIDFGQIGGLDFDGNTDELLSDGVLGGSVEHLRLDLGAVGSPDDEEDLVSLTTFSVVRKVEDGISAIVGGELFDEVVIGSARRSSDVDDDLFLIGGKLEKSVTKRVSKLEFLVLVQNIIRNGDSGRHW

Showing 1 to 25 of 25 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031048: Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 13 (Eukaryote Community Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences