NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300030789

3300030789: Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 3B (Eukaryote Community Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300030789 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0068071 | Gp0125780 | Ga0102766
Sample NameForest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 3B (Eukaryote Community Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size292195540
Sequencing Scaffolds33
Novel Protein Genes41
Associated Families33

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available24
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Albuginales → Albuginaceae → Albugo → Albugo candida1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Mycenaceae → Mycena1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea1
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Ophiocordycipitaceae → Ophiocordyceps → Ophiocordyceps sinensis1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameForest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biomeneedleleaf forestforest soil
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationNew Mexico, USA
CoordinatesLat. (o)35.8911Long. (o)-106.2978Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000025Metagenome / Metatranscriptome5578Y
F000914Metagenome / Metatranscriptome836Y
F001256Metagenome / Metatranscriptome736Y
F002649Metagenome / Metatranscriptome539N
F002654Metagenome / Metatranscriptome539Y
F002685Metagenome / Metatranscriptome536N
F003347Metagenome / Metatranscriptome492Y
F004576Metagenome / Metatranscriptome432Y
F004833Metagenome / Metatranscriptome421Y
F006580Metagenome / Metatranscriptome369Y
F008600Metagenome / Metatranscriptome330Y
F009871Metagenome / Metatranscriptome311Y
F010520Metagenome / Metatranscriptome302Y
F014948Metagenome / Metatranscriptome258Y
F015690Metagenome / Metatranscriptome252Y
F018114Metagenome / Metatranscriptome236Y
F022801Metagenome / Metatranscriptome212Y
F041556Metagenome / Metatranscriptome159N
F056191Metagenome / Metatranscriptome138Y
F060086Metagenome / Metatranscriptome133Y
F062378Metagenome / Metatranscriptome130Y
F063284Metagenome / Metatranscriptome129Y
F066326Metagenome / Metatranscriptome126N
F068325Metagenome / Metatranscriptome124Y
F071788Metagenome / Metatranscriptome122Y
F071892Metagenome / Metatranscriptome121Y
F072988Metagenome / Metatranscriptome120Y
F076689Metagenome / Metatranscriptome117N
F076785Metagenome / Metatranscriptome117Y
F078134Metagenome / Metatranscriptome116N
F084831Metagenome / Metatranscriptome112N
F087439Metagenome / Metatranscriptome110Y
F104185Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0102766_10002983Not Available523Open in IMG/M
Ga0102766_10017396Not Available571Open in IMG/M
Ga0102766_10025950Not Available572Open in IMG/M
Ga0102766_10043029Not Available612Open in IMG/M
Ga0102766_10045387Not Available503Open in IMG/M
Ga0102766_10057195Not Available563Open in IMG/M
Ga0102766_10059517Not Available866Open in IMG/M
Ga0102766_10059910All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola1051Open in IMG/M
Ga0102766_10061068Not Available933Open in IMG/M
Ga0102766_10067885Not Available552Open in IMG/M
Ga0102766_10088117Not Available649Open in IMG/M
Ga0102766_10088279Not Available532Open in IMG/M
Ga0102766_10089564Not Available600Open in IMG/M
Ga0102766_10092754Not Available514Open in IMG/M
Ga0102766_10094127Not Available529Open in IMG/M
Ga0102766_10103907All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia523Open in IMG/M
Ga0102766_10106860Not Available602Open in IMG/M
Ga0102766_10108685Not Available524Open in IMG/M
Ga0102766_10109929Not Available1291Open in IMG/M
Ga0102766_10110022Not Available500Open in IMG/M
Ga0102766_10652927Not Available588Open in IMG/M
Ga0102766_10717003Not Available551Open in IMG/M
Ga0102766_10881265All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia521Open in IMG/M
Ga0102766_10909255All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Albuginales → Albuginaceae → Albugo → Albugo candida771Open in IMG/M
Ga0102766_10965041All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Mycenaceae → Mycena531Open in IMG/M
Ga0102766_10965345Not Available545Open in IMG/M
Ga0102766_10977061All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea555Open in IMG/M
Ga0102766_10991094Not Available552Open in IMG/M
Ga0102766_10995799Not Available507Open in IMG/M
Ga0102766_10997917All Organisms → cellular organisms → Eukaryota509Open in IMG/M
Ga0102766_11006638All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Ophiocordycipitaceae → Ophiocordyceps → Ophiocordyceps sinensis3127Open in IMG/M
Ga0102766_11013702Not Available533Open in IMG/M
Ga0102766_11015843All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata582Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0102766_10002983Ga0102766_100029831F071892FRPIILAFAIITLLCCIIGLGLAAANKRGMFTDDQSGIYITNNVRAAFGLLGNCLGIVTIAILLALWSRSFWSKKVVIMWIFLSCVTLYFLAGASAMWAQVIYLSQGYATKAWPAELAFEVIASLLFIVLMCLVATTLRRKVKETTVTTVEVNKR
Ga0102766_10004694Ga0102766_100046941F087439HIPTTHLTKVLPPVPVPPPNVQVRNAPDHATVEQTLKNLGLTSMMR
Ga0102766_10017396Ga0102766_100173961F078134TQTTLNQPNSASPNFSVDVGVIALTWQGVGAFDATFGVPGDIGAFVQLTGYIFEGGTINLAASQNSTLVQFDGATDYTDRIVGAWTSQWSCIQNLSNADPTYIWSIGHDFFDFSGVNPNFTYTGFVSAFGYHAFALPGRQMPVPINGGYGSFNGVKGYYQNTIVSPFPVTFHADFFLHGGGAFQ
Ga0102766_10025950Ga0102766_100259501F003347CPKKVSISSCKVPASMNPSFSPNARKCFLYFCNSNYQEPDPQPVRRQAGAVEHWADLHREFADVLDINELQKYRKHFRAFGEKEGFIDAGTLHELMETFFGQDLERKQIIETIAEIDYDNDSRISYREFLEVMCGLKSGRKSKFGNFYKVLTLKNPPFWASRVGRIQN
Ga0102766_10027456Ga0102766_100274561F063284ALPPCEKATQDWVHKYINPISIAAITLSVLQFIALAGSCFIIMVTKKDGDDFYTSAYHY
Ga0102766_10043029Ga0102766_100430291F004833RAVTDWKATGFVQTSIKEAATLYTQVKKLPLGVPEEMIQLAASDAKIKKRLNQWLNHLKATLIAHQAQCERAQAGVRRIYKAYKGTIVAIRKALQADSKEIGKALENYKILIKVYSQNEKIYSNLFDSNSLLIQQTNKYCATEKNNYTSGLKAMEAQLKTFVTLRFWLRKNFHKVKRWIRRRYAKLA
Ga0102766_10045387Ga0102766_100453871F071892CLDRSSSFFAIIALLCCIIGLGLAAANKRGMFTDSGVFVTNNVLAAFGMLGTVLGIIATAILLAFVFKNYWNKKVVIVWIFLSSVALFFMAGASAMWAEVIYLEGYATKAWPAELAFEVAASFLFIMLMCFVVSTLRTKDKKTTTVQVVEVNKR
Ga0102766_10057195Ga0102766_100571951F084831VFSLRGTLISSLKMIQGIGMSRASFLLDSLGFSRHFKTIFMNHYQHGNIVVLLKSRYVLDTRLKELHLQRLEFFFARTFVKGKRLFDGLPLGGRSHSNGANALILKPFSEKYNEEILSRQRRIANYAKTRIKKRRK
Ga0102766_10059517Ga0102766_100595171F072988FKLGCDEDFKSSIGCLVEVNKHANEACQTKCTPQAAKLNTFIQERDAHPDEQVHAPKDVLESGCNFVNCRLNCRKTDIEERCQQKGWESAKKLTAAFAGSAKMLYKRTGGDLQNWPEVCQSDKIIEHHD
Ga0102766_10059910Ga0102766_100599101F015690LFLSTHGLYYMNLDQVASWMNGNMDAEFHAIVHRQNKSKGHLNKGELQYTTDSDGYVRQINPLTGFTYSHRSIEPLFHTDSCRVLGGKYGLTWDINKGAGDTYHIKFVLCDPKAANDILDPWMLVEKDREVFVRGDVTVYRVLGFEWYAYHGTNGQTLLEDVELYDRLRRTIAGKERTPRAKSDLMAMCRRLANKNDIISIHQGFCHDVPPERMSDYVNAAFYADVKHELEVALLHHRENKAAVDALNKYYAEGVAPPDYTNVARVGRAVATPFNILVGLLNTSHNGPKHELLGGKLRGVVEQEPPDPFRGFGKDSPTVKMPGFYIE
Ga0102766_10061068Ga0102766_100610682F056191AEMSETFPSGGSMHASVKLEGIDGRAPQERVEHVA
Ga0102766_10067885Ga0102766_100678851F056191LALKIWCEARFRHALTAEMSETFPSGGSMHASVKLEGIDGRAPQERVEHV
Ga0102766_10074174Ga0102766_100741741F087439TSCACSTKVLPAVPVPPPNVQVRNAPDRATVEKTLNDLGLSALLQ
Ga0102766_10076012Ga0102766_100760121F000025ALFATVALAQTKPAWPAAASASLFVHGWERRDDRHFLRYMYDQAAGKERIEGPREHRGEFYWTTTILDTTTKKEYFIIHQESLIECYYRTTNATIPKPNFAAARYIGKAEIEFNVVDQWIERSPEGRDHLRIFDRVDNGYIVRLDSDDGRRGHVTTFSFHEWNAGAQDKNLF
Ga0102766_10080560Ga0102766_100805601F000025KVFVILSALLIAFVAAQNKPVWPTAASTSLFVHGWEHREDRHFLRWFFDQTAGKERIDGPRDFGGEQYWTTTILNTNTKREYFIVHQGSLIQCYERASNITIPHPHFDRARYIGKAEIENVVVDHWIERNPEGRDFLSIFSSVATGHVLRSDFDHEGRRPHATTFEFHEWNVGAQDPNLFVVPSAILAICNSV
Ga0102766_10083865Ga0102766_100838651F000025ASASLFIQGWERRDDRHFLRYMYDATAGKERIEGPREWHGEMYWTTTILNTATQKEYFIIHQEELLECYYRTSNATIPKPNFNNARYAGKAEVDYVVVDHWIERSPDGRDHLQIYDRVDNGYVVRTDFDDGRRGHATTFKFHEWNAGAQDPNLFVVPANILPVCNSI
Ga0102766_10088117Ga0102766_100881171F009871GIKDAAEAIEDNTKFVIPKDPLANTTGIPVIEKTVDLTDDVNKAIERAKEAQPKIVENTTVDLTDRLKNLVPKIEENITVDLTDRLKNLVPKDDHQPEGIQENANWAKEGIKDNVNYAKDVFGESASHKENTHFTQNVLADNVNYAKESQTEVLAKGLPVDSKDRIPEYSPNINVVLNNPLRFEIVDK
Ga0102766_10088279Ga0102766_100882791F056191VYEARFRHELTAEMSKTLSSWGSMHASVKLEGIDGRA
Ga0102766_10089564Ga0102766_100895641F002649MNLNHEPIITDHVHPSFAYNSHGYPKHLRRFVIVYLIIDFFTLIVSIINFGFMSHYTGYNDGYGCFDYNPTRWLVAAFAMTIISEMTWVTVIVVFLISSLMFPSLKGLRAIYLSRLNPVFQWFLVFSRLGLIIALIGLLDYKRHYVCLRDNGERWIFNFTPIIVLAIMQVIGALLWFIARLIVV
Ga0102766_10092754Ga0102766_100927541F000914AVCKIAECAFEKLVFENEATPQSNKWIKHFKHVFPSINKITDAVKLVLEDVGKMKLQANSMTLYERFQKAQNDTNDFLESASSFSERTAKVLNQPYVPPKISEEDLQKSAIDNNDVLLQKIQGGK
Ga0102766_10094127Ga0102766_100941271F002685EFWLDNIVLCSYDIMPEHIHFHLESDSDVYMRDIETKSHTYLVIELNKLLTEIKDIEFYFRKKTLPSFEDHGRVSFRLKGNGARLVLTYTVHQDPEDTIPHLREGYASFDISAMSIEFDKSTLKHPKLVPLFTNMFKSQIRHQIEKAVEKNMSGFIQKLGDMMSRNLTELNKPSF
Ga0102766_10103907Ga0102766_101039071F008600HTSNIPVQKIQVEGTGEKVYVPPDHTSNIPVQKIQVAGTGEKVYVPPDHTSNIPVQKIQVDGTGEKVYVPPDHTSNIPVAKIQVGGTGEKTYVPPDHISNIPVVKEQASAKGQSWAPPDGSVPTVKEQPGVKGSLKYVPPDHKNNIPVVKEKIDYL
Ga0102766_10106860Ga0102766_101068602F004576TELKDMEFYYRKKTFPEFEDHGKVTFRIIGNGAKLTFTYTLRQDPEDTLPRIREGFASFDISDMDIEFDKTTLNHPHMVPMLSKVWKMQIRMEIEKEVEISLNAFMEKLGDRLMESLKGINRPFLGGIETAKKAVKSAQLTQGYEKRREKLENCK
Ga0102766_10108685Ga0102766_101086851F002654NSPKQVFKVPKLLLSEIKGVFILFDQVMGLEAAIY
Ga0102766_10109929Ga0102766_101099291F056191NNNVYEARFRHELTAEMSKTLSSWGSMHASVKLEGIDGRAPQERVEHVA
Ga0102766_10110022Ga0102766_101100222F018114GGSKIVGCMYESHRLRSGDHFTKDDMMYSCKVDDDRTDFVPFACLQREENGAAIERKVDCSWVEGHGSEAYEYTCKADSGKVAKVQTQCVYRAPQGVLKLQPGCVQLAETVAVGCRQDAESGRLQIETFSADQIDNLPGLRQC
Ga0102766_10652927Ga0102766_106529271F066326NNKRPFDSIDDISSQEQQTAINVSLSHSPMNHTNSSDDSGSENEFMNDSPYHKKRRTYEYTRPLTRPSSPTSSKKFLTDSDFTTDWNIHSVDEDLFLQWIPKRKRTNYQQGKKEDLIFSINDVKLMLKSAIEETQRRTEEQFQKVLSNKLKEQLQVLSCVVNDSVNRQLEMSSNDYMM
Ga0102766_10717003Ga0102766_107170031F104185GRVKEHVIKVWKYDDEKKKAEPYKTINAKGSYPDCIVPNEDEGQLLFTSRDQFLESYDFGTDKTSIVNLNPHIKKTNALVFLENLGKVSVCDYTSGKVCILN
Ga0102766_10771178Ga0102766_107711782F076689TKAQPAIIISYLVPGNPYPVIEDPNKPGKLAGEVIKVGYQSHYVLTTNRGMPFEKIEYKNIFDEIVVDQESQVAPAYVLLLDNKGFPALIRDFERRTCEDDPANEEFERL
Ga0102766_10881265Ga0102766_108812651F071788GQVSREAHVKPKQLLGYAAIAFVLFFVIKDPAGAAHIVSNIGNFLSSVARGFTDFFNSL
Ga0102766_10909255Ga0102766_109092551F060086ATAGQEDPFELDSNLLLSSGRHGEDRKRQYFVYDHETPLLGDLAD
Ga0102766_10965041Ga0102766_109650412F022801MQLIAMRPPHPSSGASQATAVFPQLFPATVIGLQLRPMGTSSPVRSRPRRAATTEAAALSDATTLLQHWLDVGGVTGGVVVGVAAARQRSTDIVVTRKRLENMFG
Ga0102766_10965345Ga0102766_109653451F041556LYCPPSEMSTRKTFNATTSGTYYCIGWDVLCYNSFSSQSVECKPEPVDPEIPKGSAKSKQSSITVITLSIIGGMVIFLAFVAFVAFYRRRWLKHSVESEMTDYAPVSVTDLTEDYSSATAVQTNGMPVQVLAPVYIATQPH
Ga0102766_10977061Ga0102766_109770611F014948QPISILLAFLVGCITLLTMTCALSINTNQEKQQQFEPSITDMRVKRSLANKRFYDFGSRSINLNDDDLQEFNDDYNRLRRFYDFGSKKRLATRFYDFGSKKKRSDE
Ga0102766_10984780Ga0102766_109847802F010520PKPKCELVCENPNCVPKVQCCNCAVGGIAQTMGMPFFKETEKDPNCCGCNKVQKPLILVPEATLNTRTDRRVHDMGTHIVEHNTREYHNMYEHPVPIGDSYYARPDHIIDQFENTRANPYSIKQ
Ga0102766_10991094Ga0102766_109910941F006580GVATGHATGHPAEMYFCDPINATCIQTPNGTLPGDVCKAQCTVNPIPPILQNRYFRGLEIDTRYRPGEWRAHFTTNTLIFVSPDGTVLQANVTIVSEYLTISIPSGKYQTLWQLQPGPAVDNLSWAWGPLNGLPPNSFDEAMTAPGQAQFWFVSCHQGAPTTICDFST
Ga0102766_10995799Ga0102766_109957991F068325CCECREVPNPQTGNGYLEYVPSCKNGGDGCIRNTGCRYCYREVGFFNNVGNRPQCTRFLAPVEQEICHDDICCADKQHQNPLTGNGYLEFESSCLNGGDGCIGNSGCRLCYRPVSGGINIGNRKNCTRANLGL
Ga0102766_10997917Ga0102766_109979171F076785FFFFFVIQKVEGKSSFVFLSIVYINLNSLDFLHDRLAIDFGQVGGLDFDGNTDELLSDGILGGSVEHLRLDLGAVGSPHDEEDLVSLSTFSLVFKVVNGISAIVGGELFDEVVIGSARGSSGVDDDLFLIGRKLEKSVTKRVPKLEFLVLVQDVIRNSDSRRHVCC
Ga0102766_11006638Ga0102766_110066381F062378MAASKPIPLSTYIQTFLFSLNNNFGTLTFVLGCFPFDIQPYRYMSDNSRFIFALPSLHPH
Ga0102766_11013702Ga0102766_110137021F001256RLPLDIILIVVGLIDAIFGIFLIFLPVTTFLGLFYLAVGALTITVARHSDRWGGDKGIDFLLAVTTIIFLLTGGLTFVAYDWGAGKDYFNRIGDYVPFCDNDMNIVGHGPGNYSDRCGNYALFIAFSVFLLFLLQPIALLAAAFKRVGHHQDTTVVVTDTHKKHNNK
Ga0102766_11015843Ga0102766_110158431F002654KVVCLKGNSPEQVFKVPKLLLSENKEVFKPYNQEIGLEAAIF

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