3300030717: Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - UN-3 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300030717
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0135150 | Gp0323848 | Ga0307927
• Sample Name: Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - UN-3 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 89089381
• Sequencing Scaffolds: 16
• Novel Protein Genes: 18
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus shizuokensis	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Coleofasciculus → environmental samples → uncultured Coleofasciculus sp.	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium B3_Pla	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Risofladan, Vaasa, Finland
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → land → soil
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023034	Metagenome / Metatranscriptome	211	Y
F029652	Metagenome / Metatranscriptome	187	Y
F033261	Metagenome / Metatranscriptome	178	Y
F037999	Metagenome / Metatranscriptome	167	Y
F038478	Metagenome / Metatranscriptome	166	Y
F043157	Metagenome / Metatranscriptome	157	Y
F048002	Metagenome / Metatranscriptome	149	Y
F057772	Metagenome / Metatranscriptome	136	Y
F059653	Metagenome / Metatranscriptome	133	Y
F069660	Metagenome / Metatranscriptome	123	Y
F074797	Metagenome / Metatranscriptome	119	Y
F080858	Metagenome / Metatranscriptome	114	Y
F081143	Metagenome / Metatranscriptome	114	Y
F091296	Metagenome / Metatranscriptome	107	Y
F091298	Metagenome / Metatranscriptome	107	Y
F092941	Metagenome / Metatranscriptome	107	N
F104155	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307927_1000427	Not Available	4955
Ga0307927_1003766	Not Available	2142
Ga0307927_1004870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1921
Ga0307927_1007647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1554
Ga0307927_1016818	All Organisms → Viruses → Predicted Viral	1028
Ga0307927_1017790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	997
Ga0307927_1021557	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	893
Ga0307927_1027313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	780
Ga0307927_1036606	Not Available	656
Ga0307927_1040764	Not Available	616
Ga0307927_1045322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus shizuokensis	580
Ga0307927_1051680	All Organisms → cellular organisms → Bacteria	538
Ga0307927_1052429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Coleofasciculus → environmental samples → uncultured Coleofasciculus sp.	534
Ga0307927_1055006	Not Available	519
Ga0307927_1055674	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium B3_Pla	515
Ga0307927_1056861	Not Available	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307927_1000427	Ga0307927_10004276	F091296	VIKRYPHTATLSYFTPGTYTLGIYEEGTLVTIGIVCNAQPNSTKYIIGESGDMIGYNWAIFSPIFAGAGSVPDNAKLTFFNKEHIILQLFEYQKHIEMKC
Ga0307927_1000427	Ga0307927_10004277	F059653	MNNKEALQSQTEYSNDNLLEKLLLDRGLDAGGTYAAANAKDIDLAAASLYFTLAAHPDLREGSFAVKYNGAQLIALAKTILRKYDLETMPTVNGEAIW
Ga0307927_1003766	Ga0307927_10037662	F023034	MNLSFYSTRAYENIRNWTLGQNKPNSNPIKPNFKRAKMNVNSFITKDYRKNDALAVQKNK
Ga0307927_1004230	Ga0307927_10042301	F037999	ERVKLMMTDPAELIDYVRRESHVVWKAVEAFIRRENDEGRDALIEGVAVLPELMSQLGNIPHRVVFIGNQGDNHKENIKKSAEENEHDWMRDVSDQYIGAFAMFVKRMSAYVEQEAKKYGFEYIEMDKELFGDVTEAVVKSLGLSAR
Ga0307927_1004870	Ga0307927_10048701	F091298	MSSAAKLRVASSAQVLEYLSIGEPVQDTRVTGLLDLDPLVVSRWLCGEDLRGIYQPIVVRHSVLDGLDLEGRTFYEIVELVGCHVATAHFKHAYFYSSLLVEDCVFEGDFDGRGMQSDGRVVFHNTVFAGWADFSALSVRGRADLVDVSFPGGTNLLRILANGSHALLGREVNLSGCRFRPADIPAGLEATRCGILPFGERSPGGAERQWGELVGREEGDPVDVVGGPLFASHQSGTVDDDDVRTALVLASGCDVK
Ga0307927_1007647	Ga0307927_10076471	F057772	LASGAEAGAAVLHQDPLDGAAADGAGFASPMSNLKIEMSCAQLALGADVGIHTGAFATDGCPENSADALI
Ga0307927_1016818	Ga0307927_10168182	F104155	MPNEEIKLAQQDTSAEAIGRLQKIYDELYAKVMQLMDEFEERSLLVDSGGGKEVVVYNAEVYCDTDHPGYVYFRIDEEMTKVNNIYVDVYPTDYRSPITL
Ga0307927_1017790	Ga0307927_10177901	F091298	MQVLQYLSIGESIQDTRVTGLLDLDPLVVSRWLCGEDMRGIYQPVVLRHCILDGLDLEGRTCYEMVELVDCTVSTAHFKQAYFYSSLLIEACIFGGDFEGRGIQSDGRVVVHNTIFNGWADFSGIHLRGRADLMNVSFPGGTNLLYVLANGAHKSLGRDIQFNGCRFRAADVPTDLDVARLGITPLGQGDLSGLE
Ga0307927_1021557	Ga0307927_10215572	F038478	ALKGKLQKRRSDLTVELIGFDFGPHKIQIQTAIVKELLEIDEEATTKVFEGLCQSFSDVCLEHHIKVDPVDLFVLVDDELGRGASTKFRDVDDGSFFAEILIPTKDFKVHEYWKYTFLHELGHSWFSTKVSRKDMESGYEDLLIDLVAICTFRKTLPPDKRVYREVRKHRTYFLTQQSKRFLGKELYKQILQDPEGYLRDLRQRI
Ga0307927_1027313	Ga0307927_10273132	F043157	VVGDRLMRILDERFRDCICLNIYDRIDSMQMLGELVMIKRAKKLERRIR
Ga0307927_1036606	Ga0307927_10366061	F080858	MPRFEELRQILGQILQESPNCYWLYDQILNRLREVCPDILEGLEERGGKSYGQGGGEYYGPDSAIAHCLRDWPECVDVQYLSGRDLQIADIKADNDAMVIYRWIG
Ga0307927_1040764	Ga0307927_10407641	F074797	MNESEPPMRCRENELSVKTTGTLTLGEECSGYLFTGYMADVIKEA
Ga0307927_1045322	Ga0307927_10453221	F069660	MTAILKLLGLIGGIVPIILTLIVAFETPGFGAEKKKVILDAINLFYDKVAEGNVMPITKEKLSGIASGFIDIVVAFFNLVGWFKHNSPTVSS
Ga0307927_1051680	Ga0307927_10516801	F033261	QEFAHRIGKHDLYLDILPPGYVLKSWRDEQGQLHREVEYDQTAFFLSAWLRCLVFNLMGRFAEAMGGQYATMWAGTLLRKFIRRPATLYLVDKELHVVFDPFPGQDELQPLLDKLNAKRTALPWLNNLVVQFSIAQNEPVHPLATPEKRKRLFGDG
Ga0307927_1052429	Ga0307927_10524291	F081143	PDDGKLCAVSRTERIATRGGRSSGQMTPRRTTYLDSKERGDNSMFVKRGTAEDVYGVALQRLSDMAKAGLLESQCPVVEWHTHW
Ga0307927_1055006	Ga0307927_10550062	F092941	MLGEILLKMVSVLTPDDIRQMKSAGCGDEVRAILGDLDKLAVSWHDGEYGVMSLVDVQIWANVRSSLDELRAALREG
Ga0307927_1055674	Ga0307927_10556741	F029652	MKLGIGGAIALGLGIWALMSWWWFVVEIIQSLVALGLVIGGVLALAIAARRMYRAKQTE
Ga0307927_1056861	Ga0307927_10568611	F048002	VGAAVRDALSDLHPMADLLASCPGMTKEHVYYLEQRGYIRPIKQRHGKIERNLYTTEQLGLVTAMWGHRQEGFSPREAYQRALREQSRGQLSMWPHEGAEA