3300030714: Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - UN-1 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300030714
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0135150 | Gp0323846 | Ga0307925
• Sample Name: Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - UN-1 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 60598806
• Sequencing Scaffolds: 15
• Novel Protein Genes: 18
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium B3_Pla	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Risofladan, Vaasa, Finland
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → land → soil
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016493	Metagenome / Metatranscriptome	246	Y
F029652	Metagenome / Metatranscriptome	187	Y
F031354	Metagenome / Metatranscriptome	182	Y
F036104	Metagenome / Metatranscriptome	170	Y
F038478	Metagenome / Metatranscriptome	166	Y
F043157	Metagenome / Metatranscriptome	157	Y
F048002	Metagenome / Metatranscriptome	149	Y
F053662	Metagenome / Metatranscriptome	141	Y
F059653	Metagenome / Metatranscriptome	133	Y
F061521	Metagenome / Metatranscriptome	131	Y
F067247	Metagenome / Metatranscriptome	126	Y
F069660	Metagenome / Metatranscriptome	123	Y
F088271	Metagenome / Metatranscriptome	109	Y
F091296	Metagenome / Metatranscriptome	107	Y
F091298	Metagenome / Metatranscriptome	107	Y
F104155	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307925_100388	Not Available	4814
Ga0307925_101912	All Organisms → cellular organisms → Bacteria	2587
Ga0307925_102831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2170
Ga0307925_106772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1414
Ga0307925_107101	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium	1377
Ga0307925_109220	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium B3_Pla	1195
Ga0307925_113108	Not Available	975
Ga0307925_113353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	966
Ga0307925_121593	Not Available	722
Ga0307925_122220	Not Available	710
Ga0307925_127380	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	621
Ga0307925_130522	Not Available	582
Ga0307925_130762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	579
Ga0307925_135700	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	531
Ga0307925_137944	Not Available	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307925_100388	Ga0307925_1003885	F059653	MNNKAALQSLTEYKNDNLLEKLLLDRGVVTGGTYAAANAKDIDLAAASLYFTLAAHPELKEGAFSIKYSGAQLIAMAKRILKKYDMDEPTVDGAAIW
Ga0307925_100388	Ga0307925_1003886	F091296	MVVERYPHTATINYYTPGTYNTIGIYTEGTLVTIGIVCNIQPNSTKYIIGESGDMIGYSWAVFSPVFAGARSVPKAAKLTFFSKEHIILQLFEYQKHVEMKC
Ga0307925_100388	Ga0307925_1003888	F031354	MKTTFDINDILYPVINTEEVQAILDGGRVYRNKKPLNSELQDIVIIPLSNYVGDEIINDATFMVNCYCKNFNNGAPNITKLRAIAKAVIDEIELYNSAPNYYVFGIVNQILLNDIDQKSMSYVNLRINCFIEK
Ga0307925_101912	Ga0307925_1019124	F053662	LPITRKEFDNSTDTLSAKVVRFLESNPDDAFELEELAEAMGGRQLEVWAILDELKRRKQVSGKCIKGTGYYCVAK
Ga0307925_102831	Ga0307925_1028313	F091298	YDSGWGMSSAAKLRVASSAQVLEYLSIGEPVQDTRVTGLLDLDPLVVSRWLCGEDLRGIYQPIVVRHSVLDGLDLEGRTFYEIVELVGCHVATAHFKHAYFYSSLLVEDCVFEGDFDGRGMQSDGRVVFHNTVFAGWADFSALSVRGRADLVDVSFPGGTNLLRILANGSHALLGREVNLSGCRFRPADIPAGLEATRCGILPFGERSPGGAERQWGELVGREEGDPVDVVGGPLFASHQSGTVDDDDVRTALVLASGCDVK
Ga0307925_106772	Ga0307925_1067721	F067247	VRKLLSIGIVLALLVTFVVPVVVAAQDDECCGYTPPDAVPLPDRITKTLAGSVMWTLLGTMDIMGKAVCATTGQMAANLGGWSDELGVIGVDITATALDGIAGLVEYVFSDALLNMPDLGTSIADLLKGISEVLAGAAE
Ga0307925_106772	Ga0307925_1067722	F043157	MRILDERFRDCICLNIYDRIDSMQMLGELVMIKRAKKLERRIR
Ga0307925_107101	Ga0307925_1071012	F104155	MPNEEVKLAQLDNNAEAIKKLQKFYDDLYAKVIQLMDEFEERGLLIDSGGGKEVVAYNAEVYADHTHPAYVYFRIDEEMTKINNIYVDVYPLPYRSPVTL
Ga0307925_109220	Ga0307925_1092202	F029652	MRLGIIGAIVLGLGIWALKYSWWFVVEIVQGLIALGLVVGGALAIAIAIRRMYRAKQTAE
Ga0307925_113108	Ga0307925_1131081	F031354	MKTTFDINDILYPIINVVPVQATIDGKVYRNKKPLNSELQDIVIIPLSNYNGDEIINDATFMINCYCKNFNNGTPDITKLRAIAGAVITKIEAYNSTSNYYIFDITNQILLQDFDQKSMSYVNLRINCFIEK
Ga0307925_113353	Ga0307925_1133531	F091298	MQVLQYLSIGESIQDTRVTGLLDLDPLVVSRWLCGEDMRGIYQPVVLRHCILDGLDLEGRTCYEMVELVDCTVSTAHFKQAYFYSSLLIEACIFGGDFEGRGIQSDGRVVVHNTIFNGWADFSGIHLRGRADLVNVSFPGGTNLLHVLANGAHKSLGRDIQFNGCRFRAADVPAGLDVARLGITPLGQGDLSGLEG
Ga0307925_121593	Ga0307925_1215932	F016493	MGWFSDKVEKFRQVPNPYFFLHIGARFLFGVGLGLLLATWLPIWTGWVFIGAAVLVAIPSTRIILR
Ga0307925_122220	Ga0307925_1222201	F048002	SQSGPKTWRKSSGVCAGLSELRPMADLLASCPGMTKEHVYYLEQRGYLRPIKQRHGKIERNLFTSEQLQLVEAMWKHRQTGLLPREAYQRALREQSGGQLTIWPEDMAEE
Ga0307925_127380	Ga0307925_1273801	F038478	VAKGILGGRALKGKLQKRRSDLTVELIGFDFGPHKIQIQTAIVKELLEIDEEATTKVFEGLCQSFSDVCLEHHIKVDPVDLFVLVDDELGRGASTKFRDVDDGSFFAEILIPTKDFKVHEYWKYTFLHELGHSWFSIEFSPEDMECGHEDLFIDLVVICTFRKILPPRKRVYQEVKKHRPYFLTQ
Ga0307925_130522	Ga0307925_1305222	F069660	MTAILKLLGLIGGIVPIVLTLITAFETPGFGAQKKKVILDAIDLFYDKVAEGNVMPITKEKLSGIASGFIDIAVAFFNLVGWFKHGNPIVSS
Ga0307925_130762	Ga0307925_1307621	F036104	MGQDGIPISIGIIIAAAILGACFVLGMVLMAVLSA
Ga0307925_135700	Ga0307925_1357001	F088271	CRNTVMEKAEIKRIADYIKDLEEGLVEWDYRGITTQGHLTKLYGIIERLMKATYETKDQELKPLLATLEMKARKCKQCIEARTGVRN
Ga0307925_137944	Ga0307925_1379441	F061521	MSEAQMRIEVERIVNLVAGFGWKKVEEKTEAGRVLLTLAKSVPESEEA