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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029897 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133355 | Gp0289621 | Ga0247036 |
| Sample Name | Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_L-B2b |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DMAC, Technical University of Denmark |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 216071653 |
| Sequencing Scaffolds | 27 |
| Novel Protein Genes | 28 |
| Associated Families | 21 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales → Chthonomonadaceae → Chthonomonas → Chthonomonas calidirosea | 1 |
| All Organisms → cellular organisms → Bacteria | 6 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 5 |
| Not Available | 9 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Niastella | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium 44-15 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Cryconite Microbial Communities Around The Greenland Ice Sheet |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → cryoconite hole → cryoconite deposit |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Greenland: Tasiilaq | |||||||
| Coordinates | Lat. (o) | 65.38 | Long. (o) | -38.53 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006162 | Metagenome / Metatranscriptome | 380 | Y |
| F009166 | Metagenome / Metatranscriptome | 322 | Y |
| F035524 | Metagenome / Metatranscriptome | 172 | Y |
| F038917 | Metagenome / Metatranscriptome | 165 | Y |
| F045483 | Metagenome | 152 | N |
| F050588 | Metagenome / Metatranscriptome | 145 | Y |
| F056936 | Metagenome / Metatranscriptome | 137 | Y |
| F060363 | Metagenome / Metatranscriptome | 133 | Y |
| F064673 | Metagenome | 128 | Y |
| F065166 | Metagenome | 128 | Y |
| F074174 | Metagenome / Metatranscriptome | 120 | Y |
| F075379 | Metagenome / Metatranscriptome | 119 | Y |
| F077506 | Metagenome / Metatranscriptome | 117 | Y |
| F080549 | Metagenome / Metatranscriptome | 115 | Y |
| F083114 | Metagenome / Metatranscriptome | 113 | Y |
| F083559 | Metagenome | 112 | Y |
| F084370 | Metagenome | 112 | Y |
| F088794 | Metagenome | 109 | N |
| F092800 | Metagenome / Metatranscriptome | 107 | Y |
| F099915 | Metagenome / Metatranscriptome | 103 | Y |
| F104247 | Metagenome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0247036_1001890 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales → Chthonomonadaceae → Chthonomonas → Chthonomonas calidirosea | 9001 | Open in IMG/M |
| Ga0247036_1003593 | All Organisms → cellular organisms → Bacteria | 6438 | Open in IMG/M |
| Ga0247036_1007899 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae | 3991 | Open in IMG/M |
| Ga0247036_1010153 | All Organisms → cellular organisms → Bacteria | 3329 | Open in IMG/M |
| Ga0247036_1011206 | All Organisms → cellular organisms → Bacteria | 3093 | Open in IMG/M |
| Ga0247036_1013953 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 2608 | Open in IMG/M |
| Ga0247036_1014281 | Not Available | 2557 | Open in IMG/M |
| Ga0247036_1014877 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 2481 | Open in IMG/M |
| Ga0247036_1016401 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 2287 | Open in IMG/M |
| Ga0247036_1017333 | Not Available | 2185 | Open in IMG/M |
| Ga0247036_1022419 | Not Available | 1746 | Open in IMG/M |
| Ga0247036_1023849 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Niastella | 1656 | Open in IMG/M |
| Ga0247036_1024088 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1641 | Open in IMG/M |
| Ga0247036_1025190 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium | 1578 | Open in IMG/M |
| Ga0247036_1027306 | Not Available | 1469 | Open in IMG/M |
| Ga0247036_1028739 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1405 | Open in IMG/M |
| Ga0247036_1036851 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium 44-15 | 1130 | Open in IMG/M |
| Ga0247036_1039046 | Not Available | 1073 | Open in IMG/M |
| Ga0247036_1041172 | Not Available | 1024 | Open in IMG/M |
| Ga0247036_1044337 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium | 961 | Open in IMG/M |
| Ga0247036_1050692 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 854 | Open in IMG/M |
| Ga0247036_1052191 | All Organisms → cellular organisms → Bacteria | 833 | Open in IMG/M |
| Ga0247036_1056891 | Not Available | 774 | Open in IMG/M |
| Ga0247036_1077774 | Not Available | 600 | Open in IMG/M |
| Ga0247036_1078007 | All Organisms → cellular organisms → Bacteria | 598 | Open in IMG/M |
| Ga0247036_1083900 | Not Available | 564 | Open in IMG/M |
| Ga0247036_1090055 | All Organisms → cellular organisms → Bacteria | 533 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0247036_1001890 | Ga0247036_10018905 | F083559 | MAIIPHTVREFGVEARKEGRAWEAAFNGPIQSWLDAETEQMTYGVTVRLSRLKDPVTRELFSTNLLFYFAEAEMHGIHNVYDMARTLPFTRIRGPRTPVPVCPARSGRLWYDANPEGVIMEDLRLTPTTLPEGGTGFFVTGQGYRGKVMLPDGRFIHDVGVYGGYLDPAERPKQLELQHLFGGIEFGAMTDDRLLTELGDGVWVRGIAESAEGSPHVESYKNSVRLPSVDSHRTVIGARSMSETKQIAYFESRSADGLSGFRLGGVIDGLHRALGLQIWDRVHRVGLGSNFVECTELGGYIGLIHVVLEKNNPEFPETLDPVHPGIDEQYEGWVVWLTLDEDGVPSIKACVRAITPDDVPTEYQGRGELFDTKRVAFPISLYRIGNALQVGYGWGDRALFQAEFEYGVVIDQLSRRSLR |
| Ga0247036_1003593 | Ga0247036_10035932 | F083559 | MNDCAVSDALTHPPSSRPPRPALVDLHILPHTIHEFGVEARKAGKSWEAAFNGPIQSWEDPETQQATYGVTVRLSRIKDPFTRELYSTNILFYLPEDAMHGMHNVYDMAQRFPFTRIRGPRTAPPLCPPRAGMLWYDANPEGVIMEDVRQSPAMLPDGRPGFFVTGQGYRGKVVLPDGLFIHDVGVYGGYLDPLERPAQLELQHLFGGIEFVHGKTGTQEDLFLTELGDGVWVKGIVGNAVDELHVESYKNSVRLPCPHAGKFLIGARSMSETKLLPYFESRDPNGLGSYALSGFVDCLPKAIGPDVWERVHRVGLGSNFIPSPEIGGHIGLIHVVLERNNPDYPETHDPSYPKIEEQYEGWVVWLDFDESGTPHVKSCLRALTPDDVPRCYQGAGELFDTKRVAFPISLYRIGDNLRVGYGWGDRALFQAEYDYQTVVRHLAA |
| Ga0247036_1007899 | Ga0247036_10078992 | F099915 | MHSKGRYKFKVINGVLSWKNDEMERYMPVSAEILTRVVMLYEKEFKRGIEIWKQLEENETDEKSIHPDDPVFEQLANWMEQLHSIFSNTEPFREKERWTDGFQLN |
| Ga0247036_1010153 | Ga0247036_10101532 | F088794 | MNAVLFVRATGGIDLPLVCSPSQVAPLLGRSDHAIRDDCMAGVIPTLPRAGGSGAHHRIATARLLDQIGIPYQIGIPYEIVASETIAP |
| Ga0247036_1011206 | Ga0247036_10112061 | F074174 | VIDLSERTRRISGSRLLEILQSYDAKSVIDPFMGYPAHLNFLKRHGIAVHGGDLVDWFVRAGEGLVVNDLTILRDSEVAEIVEMLPGRIYPMDLFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYPDDMADLPPSELAWNYIRETEHLVTQNAQRNTVRRGDFNATLGSIQADAVFIAPPGRNAHKKADARVWMWEAWWQGDPYLNIERYYRDTIFVQRTNEDSSYDRALGAVFAAAESSPLLVLQTTLQNAAHFKTVMGEFRPHVEIISPHADETYVVGH |
| Ga0247036_1013953 | Ga0247036_10139531 | F092800 | MEPINKQLPELELWLQDAQAYVFKMTGGSMKKAGFHFDRNHFTFTRKNKKSLDQLAIIFVSHFPVNFRISFQLDIWHPQIKQIKESFLGDILNKDSNLASIILQMKDFTSQDSEQQPVKDYSICDHRDLFMACDWLAHTLQYELIPICDQMSSIAHLDDFFESKPDWTLNSHSGGNICTDLIVARLNGKRDVHQRYRQLFE |
| Ga0247036_1014281 | Ga0247036_10142811 | F083559 | VTVTALLDQPKLSLIDLPTLPHTVREFGIEARKLGKAWEAAFNGPIQTWSAAGTGERTYGVTVRLSRMKDTLTRELYSTNILFYLAEKDMAGMHNIYDMAKTLPFTRIRGPRTPVPHCPPRPGRLWYDANPEGVIMEDVRLAPATLPDGRAGFFATGQGYRGKVMLPDGLFVHDVGVYGGYLDPEARPSQLELTHLFGGIEFGAEKTGGQEDLFLTELGENIWVKGIIGSVTEELHVESYKNSVRLPSPLPERTLIGARSMSETKLLPYFGTSDPASLRGYSLRGFIDGLPGAIGSEVWERVVRVGLGSNFIACPEEGGYLGLIHVVLERNEPAHPETLDPSYPKIEEQYEGWMVRLDFD |
| Ga0247036_1014877 | Ga0247036_10148772 | F083114 | MNKELDQSVKAPARVFVKLTVFGFVLISFAYVSLLVMGTALKAIH |
| Ga0247036_1016401 | Ga0247036_10164013 | F060363 | MEDSPEFPEYADVEAVFKQRKTTDEKVQMIAACTLNGKPNRSVWIEVPTTLYNGYKGKVKIIEYNIKNGMLEVLKVVKA |
| Ga0247036_1017333 | Ga0247036_10173332 | F083559 | MNTAATTTEFSSPISEPSYDDFHVMEVIPHTIHEFGVEARKAGKSWEAAFNGPIQSFEEPVTGQSAYAVTVRLSRLKDPVTRELFSTNLLFYMSHEEMSGMHNVYDMARKFPFTRIRGPRTLVPHCPPRDGRLWYDANPEGVIMEDLRLTPTTLPSGRLGFFVTGQGYRGKVTSPDGRFTHDVGVYGGYLDPLERPGQLELQHLFGGIEFAPYRAGGEENPLLTELGEDVWVKGIGENTLGLPSVSSYKNSVRLPSQDASQILIGARSMSETKQIAWFESRSADGLSGFRLGGVIDGLHRALGLQVWDRVHRVGLGSNFVDCPELGGFIGLIHIVMEKNNPAFPETLDPIHPGITEQYEGWLVWMTFDEKGVPMI |
| Ga0247036_1022419 | Ga0247036_10224191 | F083559 | QHQEVFEERLESNGSRGMDIIPHTVREFGVEARKPGKAWEAAFNGPIQSWADAEAGQTLYGVTVRLSRLKDPVSRELYSTNLLFYMPEEAMHGMHNVYEMAHRFPFTRIRGPRTPIPLCPARVGRLWYDANPEGVIMEDLRLTPAALPDGRPGFYVTGQGYRGKVMFPDGRFVHDVGVYGGYLDTQERPGQLELQHLFGGIEFGATLTDDDEGRLLAELGEGVWVKGITGNAAEDMHVESYKNSVKLPCLDGRKTLIGARSMSDTKQIAYFESLSVDGLSGFRMGGVIDGLNHALGLQIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPDFPETLDAVHPGINEQYEGWVVWLMFDADGKPIIKACVRAITPDDVPAGYEGAGELFDTKRVAFPMSLYRIGECLSVGYGWGDRALFQADFDYQTVMALLSSHRRN |
| Ga0247036_1023849 | Ga0247036_10238492 | F056936 | MLTNEVTLNIYLLVTILGLSVLVGFAFRAKMIFKCRAKIEELEREILNNYEHILELERETLKMESLLQDIKSPVITMKSPAKEELVTSKKVPDISLRKQLLSKKNADQQSASGL |
| Ga0247036_1024088 | Ga0247036_10240882 | F080549 | VVQKAKTTTKKAVASSVEESKEVETKPVPAKPAVKRKSPAKISVSKIFPEKEIPMAQIEKTNVDHHMAKKYLTQYLDRDPTPADIDKATIIKKSDSISYLKYGGKFLGTMTKTIYQTPEQKKAGKGIGVKMEFKPK |
| Ga0247036_1025190 | Ga0247036_10251902 | F050588 | METVIDLLKATQLNMQEVSIAGLLIFFFGYLFGRKKVKKLTQEIYGLQKDVLDLNEELLYGVDVSETPVIGLKPDTLKQNKITK |
| Ga0247036_1027306 | Ga0247036_10273061 | F006162 | VTDATVIELVASFAFPDIVAAASRSAWVLPSIAITIGPLLLLLLLDHLVHIPRFRPAGRALTIGPCILVATMSGNALAAVTGITAGVLLLVTATAGFHELAGIWRDQRTR |
| Ga0247036_1028739 | Ga0247036_10287392 | F065166 | MFYLTDEADSNVNPMIEIASFPKTFSDDITVEIDADTADHCIIVLSNQAGRILRMMGVNVNEGKTNIHVENVTSLEAGIYQLSVKNTNANTLYSSILTKF |
| Ga0247036_1036851 | Ga0247036_10368513 | F075379 | MQLTSKTTGQDEKLDGLLSLLMREYEDFPTIPLEGFYDRYSEFFGEELHHLQEVLFDDELVRCFVGPEGLEMEITQKGIGFMAKGGYSREIREEMICHDDALRAQKNNRLWNTLVAIGFVAAIIICFYIRHKSI |
| Ga0247036_1039046 | Ga0247036_10390461 | F038917 | MEPNDLPIVCIPLELPAAAAAELLEFLSHITETIERHYFGELHRLAQEQSAQNRDPDYSPFNRSKSDPPF |
| Ga0247036_1041172 | Ga0247036_10411721 | F077506 | VIDLSERTRRISGSRLLEILQTYDAKSVIDPFMGYPAHLNFLKRHGIAVHGGDLVDWFVRAGEGLVVNDLTILRDSEVAEIVEMLPGRIYPIDLFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYPDDMADLPPSELAWNYIRETEHLVTQNAQRNTVRRGDFNATLGSIQADAVFIAPPGRNAHKKADARVWMWEAWWQGDPYLNIEG |
| Ga0247036_1044337 | Ga0247036_10443372 | F035524 | MQLDFQLHFPLVNRVAQIRKLPYSLVILREGLYSVSVHKLPLVEYFVFFDSPMKSEQMKLKFYKTAEGKWYDKSYSEEAELNSPEFGIPQMNTGLKAVIDMYESQHMQQKSFSH |
| Ga0247036_1050692 | Ga0247036_10506921 | F009166 | PIVEPWGDSGWKAGVLLSGDGGRGNGSAKSLGEQLFASREDAWQFAETQYGGLGRD |
| Ga0247036_1052191 | Ga0247036_10521912 | F104247 | MSSAPAPLRLYPTEAAAKKAGLQLCSFSGERLATTLYALLPAGEKKPPYLLGSTYRLTVAEQRWVAEHQATITKLGRFHAGGSFMPLQTNMLRKKPPV |
| Ga0247036_1056891 | Ga0247036_10568912 | F077506 | MIEIRERTRRVSGSRLLDLCTEREITSLIDPFMGMPSHLNYLKRHGITVHGGDVLEWFVRVGEGLIVNDFTILRDSEVAEIVEMLPGRIYPVDMFKAWDGVFFSHEQCEYLGVWHANVHNLRSDGQTGLAIAGLWHVLCYWLQKAQFPDEMADVPPSELAWQYIRQTERWVCTNNAHNTVRRADFNATLAATNADCVYIAPPGRNAARKADARVWMWEAWWQGNPYLNI |
| Ga0247036_1075123 | Ga0247036_10751231 | F084370 | VRKYSTEMDGVELELVCPCGYENFERVIVQRKPHGPLVTDFVACVGCRAMYFAPRRPLDPPEKTIGSNLRAIGGPQPERALDSAAMLKRDATDAAKDYRKPGRSGPLKPGGRERS |
| Ga0247036_1077774 | Ga0247036_10777741 | F064673 | MQGITTKKLQRDMTPRDAVIRFQCSKPDFVQVSEAIQGERIHHHEVQRHPGVVAEMEVKYIFFANQADYAKKQIMHGQSCVFNVYLRQP |
| Ga0247036_1078007 | Ga0247036_10780071 | F104247 | MTSTSSPLRLYPTEAAAKKAGLALADFRGERVTTVLYALLPEDEKKPTYLLSSSIRLTVGEKRWVEEHRATVTKLGTFYPGRNFAPLQTNMVRKRKPAEQG |
| Ga0247036_1083900 | Ga0247036_10839001 | F045483 | VPGGYDVNSLHLLPESALVYPGSTDVHTNDYGGSPGNYVSRGAVAATGKSATTVHTQLEVLAYFSQTLAADGWMKTREDDTATTPEGFRAKDISWVKNSLHLSYLVEVWTVGETTQYLTQLNANE |
| Ga0247036_1090055 | Ga0247036_10900551 | F104247 | IVRRTSSHTHSNCAIGIYHRVRSAEKMTSTPSYLRLYPTEAAAKKTGLVLADFQGERLSTVLYALLPEGEKKSIYLLSSSSRLTVAEKRWVEEHWATVTKLGSFHPGRNFAPLQTNMVWRQKRAEQG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |