3300029897: Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_L-B2b

Overview

Basic Information

• IMG/M Taxon OID: 3300029897
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133355 | Gp0289621 | Ga0247036
• Sample Name: Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_L-B2b
• Sequencing Status: Permanent Draft
• Sequencing Center: DMAC, Technical University of Denmark
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 216071653
• Sequencing Scaffolds: 27
• Novel Protein Genes: 28
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales → Chthonomonadaceae → Chthonomonas → Chthonomonas calidirosea	1
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5
Not Available	9
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Niastella	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium 44-15	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Cryconite Microbial Communities Around The Greenland Ice Sheet
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → cryoconite hole → cryoconite deposit
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Greenland: Tasiilaq
• Coordinates
  • Lat. (^o): 65.38
  • Long. (^o): -38.53
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006162	Metagenome / Metatranscriptome	380	Y
F009166	Metagenome / Metatranscriptome	322	Y
F035524	Metagenome / Metatranscriptome	172	Y
F038917	Metagenome / Metatranscriptome	165	Y
F045483	Metagenome	152	N
F050588	Metagenome / Metatranscriptome	145	Y
F056936	Metagenome / Metatranscriptome	137	Y
F060363	Metagenome / Metatranscriptome	133	Y
F064673	Metagenome	128	Y
F065166	Metagenome	128	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247036_1001890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales → Chthonomonadaceae → Chthonomonas → Chthonomonas calidirosea	9001
Ga0247036_1003593	All Organisms → cellular organisms → Bacteria	6438
Ga0247036_1007899	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	3991
Ga0247036_1010153	All Organisms → cellular organisms → Bacteria	3329
Ga0247036_1011206	All Organisms → cellular organisms → Bacteria	3093
Ga0247036_1013953	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2608
Ga0247036_1014281	Not Available	2557
Ga0247036_1014877	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2481
Ga0247036_1016401	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2287
Ga0247036_1017333	Not Available	2185

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247036_1001890	Ga0247036_10018905	F083559	MAIIPHTVREFGVEARKEGRAWEAAFNGPIQSWLDAETEQMTYGVTVRLSRLKDPVTRELFSTNLLFYFAEAEMHGIHNVYDMARTLPFTRIRGPRTPVPVCPARSGRLWYDANPEGVIMEDLRLTPTTLPEGGTGFFVTGQGYRGKVMLPDGRFIHDVGVYGGYLDPAERPKQLELQHLFGGIEFGAMTDDRLLTELGDGVWVRGIAESAEGSPHVESYKNSVRLPSVDSHRTVIGARSMSETKQIAYFESRSADGLSGFRLGGVIDGLHRALGLQIWDRVHRVGLGSNFVECTELGGYIGLIHVVLEKNNPEFPETLDPVHPGIDEQYEGWVVWLTLDEDGVPSIKACVRAITPDDVPTEYQGRGELFDTKRVAFPISLYRIGNALQVGYGWGDRALFQAEFEYGVVIDQLSRRSLR
Ga0247036_1003593	Ga0247036_10035932	F083559	MNDCAVSDALTHPPSSRPPRPALVDLHILPHTIHEFGVEARKAGKSWEAAFNGPIQSWEDPETQQATYGVTVRLSRIKDPFTRELYSTNILFYLPEDAMHGMHNVYDMAQRFPFTRIRGPRTAPPLCPPRAGMLWYDANPEGVIMEDVRQSPAMLPDGRPGFFVTGQGYRGKVVLPDGLFIHDVGVYGGYLDPLERPAQLELQHLFGGIEFVHGKTGTQEDLFLTELGDGVWVKGIVGNAVDELHVESYKNSVRLPCPHAGKFLIGARSMSETKLLPYFESRDPNGLGSYALSGFVDCLPKAIGPDVWERVHRVGLGSNFIPSPEIGGHIGLIHVVLERNNPDYPETHDPSYPKIEEQYEGWVVWLDFDESGTPHVKSCLRALTPDDVPRCYQGAGELFDTKRVAFPISLYRIGDNLRVGYGWGDRALFQAEYDYQTVVRHLAA
Ga0247036_1007899	Ga0247036_10078992	F099915	MHSKGRYKFKVINGVLSWKNDEMERYMPVSAEILTRVVMLYEKEFKRGIEIWKQLEENETDEKSIHPDDPVFEQLANWMEQLHSIFSNTEPFREKERWTDGFQLN
Ga0247036_1010153	Ga0247036_10101532	F088794	MNAVLFVRATGGIDLPLVCSPSQVAPLLGRSDHAIRDDCMAGVIPTLPRAGGSGAHHRIATARLLDQIGIPYQIGIPYEIVASETIAP
Ga0247036_1011206	Ga0247036_10112061	F074174	VIDLSERTRRISGSRLLEILQSYDAKSVIDPFMGYPAHLNFLKRHGIAVHGGDLVDWFVRAGEGLVVNDLTILRDSEVAEIVEMLPGRIYPMDLFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYPDDMADLPPSELAWNYIRETEHLVTQNAQRNTVRRGDFNATLGSIQADAVFIAPPGRNAHKKADARVWMWEAWWQGDPYLNIERYYRDTIFVQRTNEDSSYDRALGAVFAAAESSPLLVLQTTLQNAAHFKTVMGEFRPHVEIISPHADETYVVGH
Ga0247036_1013953	Ga0247036_10139531	F092800	MEPINKQLPELELWLQDAQAYVFKMTGGSMKKAGFHFDRNHFTFTRKNKKSLDQLAIIFVSHFPVNFRISFQLDIWHPQIKQIKESFLGDILNKDSNLASIILQMKDFTSQDSEQQPVKDYSICDHRDLFMACDWLAHTLQYELIPICDQMSSIAHLDDFFESKPDWTLNSHSGGNICTDLIVARLNGKRDVHQRYRQLFE
Ga0247036_1014281	Ga0247036_10142811	F083559	VTVTALLDQPKLSLIDLPTLPHTVREFGIEARKLGKAWEAAFNGPIQTWSAAGTGERTYGVTVRLSRMKDTLTRELYSTNILFYLAEKDMAGMHNIYDMAKTLPFTRIRGPRTPVPHCPPRPGRLWYDANPEGVIMEDVRLAPATLPDGRAGFFATGQGYRGKVMLPDGLFVHDVGVYGGYLDPEARPSQLELTHLFGGIEFGAEKTGGQEDLFLTELGENIWVKGIIGSVTEELHVESYKNSVRLPSPLPERTLIGARSMSETKLLPYFGTSDPASLRGYSLRGFIDGLPGAIGSEVWERVVRVGLGSNFIACPEEGGYLGLIHVVLERNEPAHPETLDPSYPKIEEQYEGWMVRLDFD
Ga0247036_1014877	Ga0247036_10148772	F083114	MNKELDQSVKAPARVFVKLTVFGFVLISFAYVSLLVMGTALKAIH
Ga0247036_1016401	Ga0247036_10164013	F060363	MEDSPEFPEYADVEAVFKQRKTTDEKVQMIAACTLNGKPNRSVWIEVPTTLYNGYKGKVKIIEYNIKNGMLEVLKVVKA
Ga0247036_1017333	Ga0247036_10173332	F083559	MNTAATTTEFSSPISEPSYDDFHVMEVIPHTIHEFGVEARKAGKSWEAAFNGPIQSFEEPVTGQSAYAVTVRLSRLKDPVTRELFSTNLLFYMSHEEMSGMHNVYDMARKFPFTRIRGPRTLVPHCPPRDGRLWYDANPEGVIMEDLRLTPTTLPSGRLGFFVTGQGYRGKVTSPDGRFTHDVGVYGGYLDPLERPGQLELQHLFGGIEFAPYRAGGEENPLLTELGEDVWVKGIGENTLGLPSVSSYKNSVRLPSQDASQILIGARSMSETKQIAWFESRSADGLSGFRLGGVIDGLHRALGLQVWDRVHRVGLGSNFVDCPELGGFIGLIHIVMEKNNPAFPETLDPIHPGITEQYEGWLVWMTFDEKGVPMI
Ga0247036_1022419	Ga0247036_10224191	F083559	QHQEVFEERLESNGSRGMDIIPHTVREFGVEARKPGKAWEAAFNGPIQSWADAEAGQTLYGVTVRLSRLKDPVSRELYSTNLLFYMPEEAMHGMHNVYEMAHRFPFTRIRGPRTPIPLCPARVGRLWYDANPEGVIMEDLRLTPAALPDGRPGFYVTGQGYRGKVMFPDGRFVHDVGVYGGYLDTQERPGQLELQHLFGGIEFGATLTDDDEGRLLAELGEGVWVKGITGNAAEDMHVESYKNSVKLPCLDGRKTLIGARSMSDTKQIAYFESLSVDGLSGFRMGGVIDGLNHALGLQIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPDFPETLDAVHPGINEQYEGWVVWLMFDADGKPIIKACVRAITPDDVPAGYEGAGELFDTKRVAFPMSLYRIGECLSVGYGWGDRALFQADFDYQTVMALLSSHRRN
Ga0247036_1023849	Ga0247036_10238492	F056936	MLTNEVTLNIYLLVTILGLSVLVGFAFRAKMIFKCRAKIEELEREILNNYEHILELERETLKMESLLQDIKSPVITMKSPAKEELVTSKKVPDISLRKQLLSKKNADQQSASGL
Ga0247036_1024088	Ga0247036_10240882	F080549	VVQKAKTTTKKAVASSVEESKEVETKPVPAKPAVKRKSPAKISVSKIFPEKEIPMAQIEKTNVDHHMAKKYLTQYLDRDPTPADIDKATIIKKSDSISYLKYGGKFLGTMTKTIYQTPEQKKAGKGIGVKMEFKPK
Ga0247036_1025190	Ga0247036_10251902	F050588	METVIDLLKATQLNMQEVSIAGLLIFFFGYLFGRKKVKKLTQEIYGLQKDVLDLNEELLYGVDVSETPVIGLKPDTLKQNKITK
Ga0247036_1027306	Ga0247036_10273061	F006162	VTDATVIELVASFAFPDIVAAASRSAWVLPSIAITIGPLLLLLLLDHLVHIPRFRPAGRALTIGPCILVATMSGNALAAVTGITAGVLLLVTATAGFHELAGIWRDQRTR
Ga0247036_1028739	Ga0247036_10287392	F065166	MFYLTDEADSNVNPMIEIASFPKTFSDDITVEIDADTADHCIIVLSNQAGRILRMMGVNVNEGKTNIHVENVTSLEAGIYQLSVKNTNANTLYSSILTKF
Ga0247036_1036851	Ga0247036_10368513	F075379	MQLTSKTTGQDEKLDGLLSLLMREYEDFPTIPLEGFYDRYSEFFGEELHHLQEVLFDDELVRCFVGPEGLEMEITQKGIGFMAKGGYSREIREEMICHDDALRAQKNNRLWNTLVAIGFVAAIIICFYIRHKSI
Ga0247036_1039046	Ga0247036_10390461	F038917	MEPNDLPIVCIPLELPAAAAAELLEFLSHITETIERHYFGELHRLAQEQSAQNRDPDYSPFNRSKSDPPF
Ga0247036_1041172	Ga0247036_10411721	F077506	VIDLSERTRRISGSRLLEILQTYDAKSVIDPFMGYPAHLNFLKRHGIAVHGGDLVDWFVRAGEGLVVNDLTILRDSEVAEIVEMLPGRIYPIDLFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYPDDMADLPPSELAWNYIRETEHLVTQNAQRNTVRRGDFNATLGSIQADAVFIAPPGRNAHKKADARVWMWEAWWQGDPYLNIEG
Ga0247036_1044337	Ga0247036_10443372	F035524	MQLDFQLHFPLVNRVAQIRKLPYSLVILREGLYSVSVHKLPLVEYFVFFDSPMKSEQMKLKFYKTAEGKWYDKSYSEEAELNSPEFGIPQMNTGLKAVIDMYESQHMQQKSFSH
Ga0247036_1050692	Ga0247036_10506921	F009166	PIVEPWGDSGWKAGVLLSGDGGRGNGSAKSLGEQLFASREDAWQFAETQYGGLGRD
Ga0247036_1052191	Ga0247036_10521912	F104247	MSSAPAPLRLYPTEAAAKKAGLQLCSFSGERLATTLYALLPAGEKKPPYLLGSTYRLTVAEQRWVAEHQATITKLGRFHAGGSFMPLQTNMLRKKPPV
Ga0247036_1056891	Ga0247036_10568912	F077506	MIEIRERTRRVSGSRLLDLCTEREITSLIDPFMGMPSHLNYLKRHGITVHGGDVLEWFVRVGEGLIVNDFTILRDSEVAEIVEMLPGRIYPVDMFKAWDGVFFSHEQCEYLGVWHANVHNLRSDGQTGLAIAGLWHVLCYWLQKAQFPDEMADVPPSELAWQYIRQTERWVCTNNAHNTVRRADFNATLAATNADCVYIAPPGRNAARKADARVWMWEAWWQGNPYLNI
Ga0247036_1075123	Ga0247036_10751231	F084370	VRKYSTEMDGVELELVCPCGYENFERVIVQRKPHGPLVTDFVACVGCRAMYFAPRRPLDPPEKTIGSNLRAIGGPQPERALDSAAMLKRDATDAAKDYRKPGRSGPLKPGGRERS
Ga0247036_1077774	Ga0247036_10777741	F064673	MQGITTKKLQRDMTPRDAVIRFQCSKPDFVQVSEAIQGERIHHHEVQRHPGVVAEMEVKYIFFANQADYAKKQIMHGQSCVFNVYLRQP
Ga0247036_1078007	Ga0247036_10780071	F104247	MTSTSSPLRLYPTEAAAKKAGLALADFRGERVTTVLYALLPEDEKKPTYLLSSSIRLTVGEKRWVEEHRATVTKLGTFYPGRNFAPLQTNMVRKRKPAEQG
Ga0247036_1083900	Ga0247036_10839001	F045483	VPGGYDVNSLHLLPESALVYPGSTDVHTNDYGGSPGNYVSRGAVAATGKSATTVHTQLEVLAYFSQTLAADGWMKTREDDTATTPEGFRAKDISWVKNSLHLSYLVEVWTVGETTQYLTQLNANE
Ga0247036_1090055	Ga0247036_10900551	F104247	IVRRTSSHTHSNCAIGIYHRVRSAEKMTSTPSYLRLYPTEAAAKKTGLVLADFQGERLSTVLYALLPEGEKKSIYLLSSSSRLTVAEKRWVEEHWATVTKLGSFHPGRNFAPLQTNMVWRQKRAEQG