3300029819: Human fecal microbial communities from Shanghai, China - P103V6

Overview

Basic Information

• IMG/M Taxon OID: 3300029819
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283647 | Ga0245024
• Sample Name: Human fecal microbial communities from Shanghai, China - P103V6
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 145678258
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F067720	Metagenome	125	Y
F070093	Metagenome	123	N
F087335	Metagenome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245024_100355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	75164
Ga0245024_100563	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	51167
Ga0245024_100916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	31098
Ga0245024_102058	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	12298

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245024_100355	Ga0245024_10035579	F070093	AEFCPFRIDPPMEPEQERLFKLYSGSGIQSLPELNPNLI
Ga0245024_100563	Ga0245024_10056376	F067720	MASTTYDDFVEVNKIAQEHFRHITKMVIGRFRDLKKTYHLGAVTVMVRNAGQLPQPFWLGAARGGGSCSLSASVARA
Ga0245024_100916	Ga0245024_10091620	F087335	MIELYFNDANLLPENREEEQYAEAALNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIGPVLNEAGEPELLIRCVTEESVETVYQRAANYD
Ga0245024_102058	Ga0245024_1020589	F051936	MKQEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVISIFFAMLIIRYLSIHISIKK