3300029785: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_31_stool_2

Overview

Basic Information

• IMG/M Taxon OID: 3300029785
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282924 | Ga0243763
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_31_stool_2
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 247388828
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055715	Metagenome	138	N
F067845	Metagenome	125	N
F070093	Metagenome	123	N
F087334	Metagenome	110	N
F089053	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243763_1002374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	17760
Ga0243763_1003019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14316
Ga0243763_1015799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2409
Ga0243763_1027252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1272
Ga0243763_1062553	All Organisms → cellular organisms → Bacteria → Terrabacteria group	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243763_1002374	Ga0243763_10023743	F087334	MASRSPFVGAAVHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFGYREKHP
Ga0243763_1003019	Ga0243763_100301916	F055715	LTKANEFDKINELLIERTAKKLKKLQKKFLTNEKLCGKINELIRVGAAKILDN
Ga0243763_1015799	Ga0243763_10157991	F070093	SNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPKSTQTLS
Ga0243763_1027252	Ga0243763_10272522	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALNADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAKLLEDAAGHNEMGAAFIDYNGAAYVVAVFR
Ga0243763_1062553	Ga0243763_10625533	F089053	AFSVKLERVVDGCRPVKGCIRKWIYRSANGQPELSTAEEATVKNMEAFL