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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029775 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0121315 | Gp0152027 | Ga0134843 |
| Sample Name | Liquor fermentation pit mud microbial communities from Luzhou, China - Meta-4-1-220-B |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Chongqing University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 195018578 |
| Sequencing Scaffolds | 22 |
| Novel Protein Genes | 29 |
| Associated Families | 25 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → Euryarchaeota | 1 |
| All Organisms → cellular organisms → Bacteria | 4 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216 | 1 |
| Not Available | 3 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 1 |
| All Organisms → Viruses → Predicted Viral | 4 |
| Methanogenium → Methanogenium cariaci | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 2 |
| All Organisms → cellular organisms → Archaea | 1 |
| All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166 | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China |
| Type | Engineered |
| Taxonomy | Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Sediment (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | China: Luzhou | |||||||
| Coordinates | Lat. (o) | 28.88 | Long. (o) | 105.45 | Alt. (m) | N/A | Depth (m) | .01 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003987 | Metagenome / Metatranscriptome | 458 | Y |
| F004383 | Metagenome / Metatranscriptome | 440 | Y |
| F010099 | Metagenome / Metatranscriptome | 308 | Y |
| F011593 | Metagenome / Metatranscriptome | 289 | Y |
| F020859 | Metagenome / Metatranscriptome | 221 | Y |
| F028538 | Metagenome / Metatranscriptome | 191 | Y |
| F028664 | Metagenome | 191 | Y |
| F033857 | Metagenome / Metatranscriptome | 176 | Y |
| F042860 | Metagenome / Metatranscriptome | 157 | Y |
| F045124 | Metagenome / Metatranscriptome | 153 | Y |
| F063807 | Metagenome / Metatranscriptome | 129 | N |
| F064748 | Metagenome / Metatranscriptome | 128 | Y |
| F074840 | Metagenome / Metatranscriptome | 119 | N |
| F078879 | Metagenome / Metatranscriptome | 116 | N |
| F080199 | Metagenome / Metatranscriptome | 115 | N |
| F088950 | Metagenome / Metatranscriptome | 109 | N |
| F090569 | Metagenome / Metatranscriptome | 108 | Y |
| F090570 | Metagenome / Metatranscriptome | 108 | N |
| F091989 | Metagenome / Metatranscriptome | 107 | Y |
| F092110 | Metagenome / Metatranscriptome | 107 | Y |
| F099240 | Metagenome / Metatranscriptome | 103 | N |
| F101424 | Metagenome / Metatranscriptome | 102 | Y |
| F103495 | Metagenome / Metatranscriptome | 101 | N |
| F103498 | Metagenome / Metatranscriptome | 101 | N |
| F103501 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0134843_1000161 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 88959 | Open in IMG/M |
| Ga0134843_1001940 | All Organisms → cellular organisms → Bacteria | 15483 | Open in IMG/M |
| Ga0134843_1002231 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 13418 | Open in IMG/M |
| Ga0134843_1002709 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216 | 11101 | Open in IMG/M |
| Ga0134843_1003518 | All Organisms → cellular organisms → Bacteria | 8364 | Open in IMG/M |
| Ga0134843_1003814 | All Organisms → cellular organisms → Bacteria | 7734 | Open in IMG/M |
| Ga0134843_1003948 | Not Available | 7508 | Open in IMG/M |
| Ga0134843_1004764 | Not Available | 6104 | Open in IMG/M |
| Ga0134843_1004813 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 6035 | Open in IMG/M |
| Ga0134843_1006663 | All Organisms → Viruses → Predicted Viral | 4282 | Open in IMG/M |
| Ga0134843_1007244 | Methanogenium → Methanogenium cariaci | 3913 | Open in IMG/M |
| Ga0134843_1007737 | All Organisms → Viruses → Predicted Viral | 3654 | Open in IMG/M |
| Ga0134843_1008632 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 3246 | Open in IMG/M |
| Ga0134843_1010977 | All Organisms → cellular organisms → Archaea | 2551 | Open in IMG/M |
| Ga0134843_1013016 | All Organisms → Viruses → Predicted Viral | 2174 | Open in IMG/M |
| Ga0134843_1018912 | All Organisms → Viruses → Predicted Viral | 1528 | Open in IMG/M |
| Ga0134843_1019265 | All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166 | 1501 | Open in IMG/M |
| Ga0134843_1020619 | Not Available | 1410 | Open in IMG/M |
| Ga0134843_1023100 | All Organisms → cellular organisms → Bacteria | 1267 | Open in IMG/M |
| Ga0134843_1029493 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 999 | Open in IMG/M |
| Ga0134843_1032565 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. | 904 | Open in IMG/M |
| Ga0134843_1046923 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 627 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0134843_1000161 | Ga0134843_100016127 | F004383 | MHCDCENPCRECKGDGSECSMDPAECGHAVLPDNLLERAFVARIRADEHRAELKALQDEFNEREDVIEIKRKIDRCEEERHNCIEQAKIAGVSKIGNYLLKIRTRKTRTIVPKLFFAKHGAEAFVECCTVAIGKAEALLGKGTFDDCCEVEVKDIGTTVEYERPEGSE |
| Ga0134843_1001940 | Ga0134843_10019403 | F020859 | MKKIIAKEVNPAHVDFSFYFDDDGLKSVGGENCAVYIVPADRRRNSGFNMDEYEYIEEQAQDIIDGFHDVNDKWPNGYNSYANYKEVLEYNNVLYSPRKCHLLKEWAEHADTSDTETIAEYLTITTGEEWAVKSFTGYSQGDYCEVVYCIKHYTPEHINEIGKLWLGCGTEFSIDDCYGYFVIDELRWEEGEKLRQYLADCYGCKPDELEIRLYDGEHTVTDYKIMK |
| Ga0134843_1002231 | Ga0134843_10022319 | F090570 | VIIINEFGNGYIEKVWCNSVTTPQPLKVIPYLKDFKVFFSVKGTEIGRITIGVFVDDELDQMLTTNILVKNKSLAIWFWYPYKRKQMGKHIIQFKIGEVTDRTIDSVTWKYTSDKYIVEV |
| Ga0134843_1002709 | Ga0134843_100270911 | F092110 | MSCKDYLELKPGMKVKLSYEPWGYKDVNAVIDSVGVDYHYDETHNYGVFHPIIACYVGKYRMTFNGPINWETLVIKPCRKVYVKDLCVGDVIERDEMRGLIEIVSNENVYIRWYDKSCKVTYYTNYRNDIIFENAEIVGHVNLWNL |
| Ga0134843_1002709 | Ga0134843_100270918 | F064748 | MKRYRFIGNMEDVIPCENMSADCDAVGCKGKVWGQCHFDPKLELLSSGAEYFAEILTEREVIDTVFRVEKDGLFSSGGLNPLFVKNGKIWMKRWQIKNHFKQRTGYNCKTRTSIYLYQEYPEDAEVVEYALVEVKRTPVRKFVEGGE |
| Ga0134843_1002709 | Ga0134843_100270919 | F103501 | MITDIVLEGVVSYDNKYDLWCVDEDFIENTISEFEGKKVVVTITVI |
| Ga0134843_1002709 | Ga0134843_100270921 | F078879 | MTPEVSNEVKEGYDILEGIGIVERTESGQYYPTDVGAAIIYAVLCKQMLGAGEDEFKSEESQQVMLNRLEEMDLVEQGDESFVITIEGFTTFFTNLTYGCPCREEFIDWLALATAELAEEME |
| Ga0134843_1003518 | Ga0134843_10035182 | F045124 | MTDDDLRALIYESRQDAAATRRDIKWIKEALTEMKDANKAQDDRIAEIKARQDRQIGRDGAIAAAISAVVAFFTALASGGWLR |
| Ga0134843_1003814 | Ga0134843_10038141 | F028664 | MKENSKILIGGQALRNLGSDRYTEDVDFLVNDKSTTDAFINTVGIDYINANGNKFFNEIYNIEKGNIQATPRSLFELKVYAFVQHCQNFNFAKADSCEYDLKFLVRNFNITESKIARKYITNGEYSEIVKIVRSVKF |
| Ga0134843_1003948 | Ga0134843_10039484 | F063807 | MKPPRTLSVSAALHSRLWLLKIRRKARTLDEVIEQALDALEEQEANDG |
| Ga0134843_1004764 | Ga0134843_10047647 | F011593 | MRRVTDNNLTAPEWCLGCPDPIYDDRRGEWDWYCRQHSPTGIRCSNVAVLRDRCCRVRDYFARKEATQ |
| Ga0134843_1004813 | Ga0134843_100481310 | F103495 | MDNLLQFLIDSGILYMIVSTLLTVGIGFIVGKGVSFKEIQDIIGAIEESYEDGYISPDEARKIYKEIEDVIGQDWYIRLFRLFKR |
| Ga0134843_1004813 | Ga0134843_10048132 | F074840 | MLELNENELAQLNQFIARHERCFDDNKYELTIHLHIIGTGIGCVHKAECENCGECIDLTDYGCW |
| Ga0134843_1004813 | Ga0134843_10048138 | F090569 | MDYKVCGVFDAEKSKVENVYFNLVDNDKFVTLELVDENGNHVICSNICNIDKQSGKIDTCCNVNSYLGFILDSYGRVTIN |
| Ga0134843_1006663 | Ga0134843_10066633 | F033857 | MVEIIDLSTLSPKPVIVRIGNGDEIEEIDLTIVPARGTLLLTQATQKFGGWDKIPDDEMIPAIAAICKQSNPKITAEWLETKLTRPQLAGLTAVVQMQAYRHWGGGNRQTPKQEGGAKNP |
| Ga0134843_1007244 | Ga0134843_10072443 | F010099 | MHNSRLPLSDAVLVITYKYPLPLFSHMTDAKTSFWTPARIGAVIGAVLLVVLLAYAASLPQNKFEDGDLLEPKYAADADLGYWMVDKYDQEVDVYHLLVVMEHPNGTFEWLDGDGIWLPRRAVEGTFTVIGTFDARKANL |
| Ga0134843_1007737 | Ga0134843_10077372 | F101424 | MDYITALKTIGIIALVVVCIALLFIWYAAFCYIAYVLLGMIGITGFMQTVCGIVLGLFVASLPSVFARK |
| Ga0134843_1008632 | Ga0134843_10086324 | F042860 | MAGFTREEILKRIEIEDTRIANADRNIEGLILQKNKSLDEQARLFALLETLPTEEPEAGI |
| Ga0134843_1010977 | Ga0134843_10109772 | F103498 | MDNTETCELQHCRLRTDILCEVQRREEKQDERFLALIEELRHDWKETKKEVTSIKDTMIQGFIALIVAVIGVYVSYLLLNVIGFI |
| Ga0134843_1013016 | Ga0134843_10130162 | F099240 | VILMKLLFNYSDFHKFPLDACFSTLRLLLIDNFNGVYKDENGKLIAVFDYNETEREQRIIRSASGFLENYGYDLKHHTEIVDSVEHLEFVTKTCGVDYE |
| Ga0134843_1018912 | Ga0134843_10189122 | F003987 | MIPALPCGTFADSETPAGAFYIAAFEPGDAPHHVGEYRIDVVIRALQALKACGYDDVEVGSIECSDRTHLLLIGLDGEARFGDRQLGCIAVLPVGVD |
| Ga0134843_1018912 | Ga0134843_10189124 | F028538 | IEIKRKIDRCEEERHNCIEQAKAAGISKIGNYLLKIRTRKTRTVVPKLFFAKHGAEAFVECCTVAIGKAEALLGKSALDDCCEVEVKEIGTTVEYERPEGSE |
| Ga0134843_1019265 | Ga0134843_10192651 | F003987 | ISMIPALPCGTFADSETPAGAFYIAAFEPSDIPHHVGEYRIETVIRAAEALRTCGYDDVEIGSIERDGKTHLLLIGLDRETRFGDRQMGCIAVLPVEVE |
| Ga0134843_1020619 | Ga0134843_10206192 | F088950 | MDIDGVLKELADFIEEKVPELDKKVTTIYPETERFAPPTIVIDIVAGRETLIVDGTKTHELVRIAIVSDKKSEINRIFNLITNAFLDYGRELTLCAYGGVSYISPVAPAFVEKNSILKRELDIVVIEFRKRG |
| Ga0134843_1020619 | Ga0134843_10206193 | F080199 | IMKTVVYGVEETNAKLSQILAVVQDNVDNTLDLFSGDMTKEIKDSAPYDTGRYMSSWFYERKESLKYAIISQNSYVPYNTVLVFGTEKFKPIANEPRYKYPDSDRGIIHDVRQIKFIYSIKLGQLIKRVNLIGANISLAGL |
| Ga0134843_1023100 | Ga0134843_10231002 | F042860 | MTKEEIMKRIEIEDIRVSSNNRNIEGLINQNNRSLDEQARLFVLLEALPAEEPMSEPEAG |
| Ga0134843_1029493 | Ga0134843_10294932 | F042860 | MTKEEIMKRLEIEDARIASADRNIEGLIKQKNKSLDEQARLWALLDGLPEEQEAGG |
| Ga0134843_1032565 | Ga0134843_10325652 | F091989 | PFGEFDEQKATLKSLQVSTMALCWIDANGKLVPFDSAEFNAVQKEIAALQGKIDNNSSVLEKLDAKVAELGLTEFSISKLKSQIEKLRSQINQIRAEENDSLRSKWEAVVSLGGNRGTYDALPEVIEARAKAAEKIAPIEAEIMALNAQIRSLESILSKFKR |
| Ga0134843_1046923 | Ga0134843_10469232 | F045124 | MTDDTTLQAMIYETRQDVRWIKDTLKEIKEANQAQDERIAEIKARQDKQTGRDSAIAVAISAVVAFFTALASGGWLQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |