3300029674: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_6_6_50m (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300029674
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0306347 | Ga0265604
• Sample Name: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_6_6_50m (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 54447410
• Sequencing Scaffolds: 17
• Novel Protein Genes: 17
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → lake → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Canada: Sakinaw lake, British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Alt. (m): N/A
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F000388	Metagenome / Metatranscriptome	1201	Y
F004178	Metagenome / Metatranscriptome	449	Y
F004323	Metagenome / Metatranscriptome	443	Y
F025295	Metagenome / Metatranscriptome	202	Y
F046170	Metagenome / Metatranscriptome	151	Y
F052683	Metagenome / Metatranscriptome	142	Y
F060598	Metagenome / Metatranscriptome	132	Y
F071959	Metagenome / Metatranscriptome	121	Y
F088317	Metagenome / Metatranscriptome	109	Y
F089118	Metagenome / Metatranscriptome	109	Y
F101433	Metagenome / Metatranscriptome	102	Y
F105212	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0265604_100258	Not Available	4719
Ga0265604_105570	Not Available	1350
Ga0265604_110065	Not Available	990
Ga0265604_111627	Not Available	920
Ga0265604_112692	Not Available	875
Ga0265604_112972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	866
Ga0265604_113559	Not Available	844
Ga0265604_114853	Not Available	803
Ga0265604_115169	Not Available	794
Ga0265604_115654	Not Available	781
Ga0265604_115657	Not Available	781
Ga0265604_115934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	774
Ga0265604_116326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	763
Ga0265604_116380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	762
Ga0265604_116475	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	759
Ga0265604_125946	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	590
Ga0265604_127146	Not Available	576

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0265604_100258	Ga0265604_1002582	F046170	MIRIEDFGEIAYGGAVTLTEWWDNKRIDQGKIGAKDVFKKASFYTYLGVGLTATLMSVFGWMKRYERWEEHVSHGFLYDLPRFAYGLTKALGAGGKRGSDSSAVQEAQRILNEKMRAKALGSGRTADRSYQQEFETVAPHAF
Ga0265604_105570	Ga0265604_1055701	F060598	GPRRVSVDGHNLPRYTRIVAVTKGKIGNTGRVLKAEELVLAFDLDAKRWLALRVYQGSKKLRLALPEIVAELRRHRDEGKGPWRLFFDKGDYKGQIFRDLAAMEEVHFYCPAVRYPDNVAQWERLTEEDFDPEPFVFAKHADLSPEERPVYRLADTEMTINVWENGQVVGTVTLRAVVIHAPQGQKPAERWPVVYLTDDGQIDARALANEFGDHWGQEFAHRVGKHDLCLDILPPGYTLTSQRDEEGQLQRQVEYDTTAFFLSAWLRCLVFNLMSLFAQELEGEYAKMWAGTLLRKFIRRPATLYLVGNELHVVFDPFPDQEALRPLLDRLNAKRVALSWLNGLVVQFSIARDEPLHPLTKPEKRQRLFGDD
Ga0265604_110065	Ga0265604_1100651	F052683	MRSILKQKKAIMGPVISVFVMVLVISILAGLTFLFVSQLKTQVYNTAEGNSSSTAYQAVNDTEAAGATIVGYLPLIFLAVIFGAILTLVLRIILPYINLGQTMGGF
Ga0265604_111627	Ga0265604_1116272	F089118	WVILFAVLVGALVLFSLKSMQTGTRLSQRLGEIEQARETLSGMFPDSRFRVQFSAPKPGIRNLVITIQPGHADSGAITQMVESAESVARRKVDLTGYDSLVVAVFDSVYRTVPAR
Ga0265604_112692	Ga0265604_1126922	F105212	SPKNGGSGQKFLIELEAKSHGSQDPHHRWVGVWDYEEQSEEARITKKC
Ga0265604_112972	Ga0265604_1129721	F088317	MPGPEDKSSYPPRPTLTQDDVNKDRPTTRRDAYEGIKAPPLPPMDKSQILRTIESGFKEPEEAGRYVMRPSADLPYRVLSLNTKFHSCNTRHLKEIGAFRTLAPELFGDAGYKLVDDAYASFAYSEFATARARGQLKNAPNCTAREIGAFIATVYDIQNFPIVIAEASDKRVRIQLYKGLPIYCPYDVRRGDYRLCAATAGYERELTKLCNPKLRAYLSRTKAIGDDCCELTIEPDPNA
Ga0265604_113559	Ga0265604_1135592	F025295	VTGPGEATELLRRREVLIPEKLKFITRKSNLQKQI
Ga0265604_114853	Ga0265604_1148531	F000344	MRPKHPHAAESGVGKHTARESESAKRCAAGKERVAN
Ga0265604_115169	Ga0265604_1151692	F000344	MRPTSAHAALSGVGEHTARESESAKCCADGKERVAN
Ga0265604_115654	Ga0265604_1156541	F071959	MASRNYLVMSNDMTFTDKKEYRTKALAAGLERCGLKSIGDINSDVPGLQAIPIGNKSARVAAIKSFIETGVWPKTIDQRELAPLTDFVAAAAQDFWQTIALGAIGTVYTCLNALPAYTLPAGRLMVCYGVSVDVAVLPVSRLIFRRGGVAGNIQAQFDMQPLGTRLETAAFFSEPVVIDPQELFAI
Ga0265604_115657	Ga0265604_1156571	F004323	MPLDGLRRLEGKATPVVASLSPVTRDYPSRALSGVFQAAALRL
Ga0265604_115934	Ga0265604_1159341	F088317	MPGPEDKISYPAKQTISQDALNATAPKVRTDVYKGVQVPALPPLEKSQILRSIESGFKETEDPTRYIMNPPGDLPYRLLPLSTKFVSCNTRHLKEIGAFRTLCPELFGDAGYKLVDDAYASFAFGEFKTAQTRGQLKNAPNCTAKEIGAFIATVYDIQNFPVVIAEATDKRVRIQLYKGLPVYCPYDTRRGDYRLCAATAGYERELTKLCNPKLHAFLSRTKAIGDDCCELTIEPDPNA
Ga0265604_116326	Ga0265604_1163261	F004323	MPLDGLHRLEGRTTPAVAIHSPVTRDYPSRALSGVFQAAALRLF
Ga0265604_116380	Ga0265604_1163801	F004323	MPRNGLRRLEGRATPAVAIHSPVTRDYPSRALSDVFQAAALRL
Ga0265604_116475	Ga0265604_1164752	F004178	MRPTASHAAKSSVGKHTARESEAPNVCDWERARGER
Ga0265604_125946	Ga0265604_1259461	F101433	MKRRVAFVLLAVIGIAAVVLGIRFGDPETIHRFAAQIWLSCMGLV
Ga0265604_127146	Ga0265604_1271461	F000388	KEYFQTEDEKVYFFEPLEKEISVEDMQKIVDANEKLVKELKNAKD