Sample 3300029673

Basic Information
IMG/M Taxon OID	3300029673 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116197 \| Gp0321342 \| Ga0307355
Sample Name	Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Trp2 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Trp2 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	58420548
Sequencing Scaffolds	27
Novel Protein Genes	31
Associated Families	30

Dataset Contents

Total Genome Size

58420548

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota	2
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin141	1
Not Available	17
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Archaea → Euryarchaeota

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin141

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

Ecosystem Assignment (GOLD)
Name	Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
Type	Engineered
Taxonomy	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Ecosystem Assignment (GOLD)

Name

Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Type

Engineered

Taxonomy

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	44.11	Long. (^o)	-88.23	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wisconsin

Coordinates

Lat. (^o)

44.11

Long. (^o)

-88.23

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004383	Metagenome / Metatranscriptome	440	Y
F020914	Metagenome / Metatranscriptome	221	N
F025291	Metagenome / Metatranscriptome	202	N
F029768	Metagenome / Metatranscriptome	187	N
F033857	Metagenome / Metatranscriptome	176	Y
F035785	Metagenome / Metatranscriptome	171	Y
F036251	Metagenome / Metatranscriptome	170	Y
F040648	Metagenome / Metatranscriptome	161	Y
F048390	Metagenome / Metatranscriptome	148	Y
F049070	Metagenome / Metatranscriptome	147	Y
F051952	Metatranscriptome	143	N
F054063	Metagenome / Metatranscriptome	140	N
F055836	Metagenome / Metatranscriptome	138	Y
F062800	Metagenome / Metatranscriptome	130	N
F064746	Metagenome / Metatranscriptome	128	N
F067770	Metagenome / Metatranscriptome	125	N
F068879	Metagenome / Metatranscriptome	124	N
F070165	Metagenome / Metatranscriptome	123	N
F071368	Metagenome / Metatranscriptome	122	N
F075034	Metagenome / Metatranscriptome	119	Y
F077342	Metagenome / Metatranscriptome	117	N
F078879	Metagenome / Metatranscriptome	116	N
F082734	Metagenome / Metatranscriptome	113	N
F088950	Metagenome / Metatranscriptome	109	N
F090570	Metagenome / Metatranscriptome	108	N
F093911	Metagenome / Metatranscriptome	106	N
F094051	Metagenome / Metatranscriptome	106	N
F101223	Metagenome / Metatranscriptome	102	N
F101424	Metagenome / Metatranscriptome	102	Y
F103328	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0307355_100291	All Organisms → cellular organisms → Archaea → Euryarchaeota	6458	Open in IMG/M
Ga0307355_100654	All Organisms → Viruses → Predicted Viral	4396	Open in IMG/M
Ga0307355_102316	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217	2463	Open in IMG/M
Ga0307355_102499	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin141	2377	Open in IMG/M
Ga0307355_106041	All Organisms → Viruses → Predicted Viral	1506	Open in IMG/M
Ga0307355_108164	Not Available	1278	Open in IMG/M
Ga0307355_109085	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1207	Open in IMG/M
Ga0307355_109255	Not Available	1194	Open in IMG/M
Ga0307355_109713	Not Available	1162	Open in IMG/M
Ga0307355_110928	Not Available	1081	Open in IMG/M
Ga0307355_112445	Not Available	998	Open in IMG/M
Ga0307355_114017	Not Available	928	Open in IMG/M
Ga0307355_116048	Not Available	857	Open in IMG/M
Ga0307355_117090	Not Available	823	Open in IMG/M
Ga0307355_118453	Not Available	784	Open in IMG/M
Ga0307355_119245	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	765	Open in IMG/M
Ga0307355_121779	Not Available	705	Open in IMG/M
Ga0307355_122703	Not Available	686	Open in IMG/M
Ga0307355_124435	Not Available	655	Open in IMG/M
Ga0307355_125935	All Organisms → cellular organisms → Archaea → Euryarchaeota	630	Open in IMG/M
Ga0307355_126822	Not Available	617	Open in IMG/M
Ga0307355_129930	Not Available	575	Open in IMG/M
Ga0307355_131703	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	554	Open in IMG/M
Ga0307355_133652	Not Available	534	Open in IMG/M
Ga0307355_134422	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	526	Open in IMG/M
Ga0307355_134932	Not Available	522	Open in IMG/M
Ga0307355_135513	Not Available	516	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307355_100291	Ga0307355_1002912	F094051	MANTGVLGKVQIEGNWTQKRLILPVIQAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHRPTALVMGTLAGAYYVDAVGDKVAIANLTEWRGAVSIHPTLNIPVFISTDVDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSPFSNIQQTSGNLNLGVMRGIMTES
Ga0307355_100654	Ga0307355_1006542	F090570	MDEFGNAYIEKVWCNSVRTPKPLKVIPYEKDFKVFFSVKGTEIGRITIGVFVDDELDQMLTTNILEKNKSLAIWFWYPYKRKQMGKHVIQFKIGEATDRTIDSVTWKYTSDKYIVEVK
Ga0307355_102316	Ga0307355_1023161	F093911	RVLGDFMRLYDAYKNGEITRTEYLAYLDFGYKPSDSVFLTQNRSTEMVTISYLSMENNYNWSIDDGESMMAYVGPINDLSNAGSLNNAGSILFLYKDGKIVNTGTITNTGHIALQSI
Ga0307355_102499	Ga0307355_1024991	F088950	LRPVWKVPPPLDTQTSQRMWGESSGSGTETRELADFIEDKVPELDNKVTTIYPESKRFAPPTVVIDIVAGRETLIIDGTKTHELVRVAIISDKKSEINRIFKLITDAFLDYGRELTLCAYGGVSYISPVAPAFVEKNSAMKRELDIVVIEFRKRR
Ga0307355_106041	Ga0307355_1060413	F101424	MDYKEMLKLIGIIALVVVCIALLIIWYAAFCYVAYVLIGMIGITGLWQTICGIVIGLFVASLPTVFKKRN
Ga0307355_108164	Ga0307355_1081641	F082734	PFFVLSDDGIVVPIYSISFIRSGIVLRSAFGEFHLPNSGSRYYHDRAKMLVLTENRSQTEDYINYKSTPGALLRGAVVRMAANGLDVGEIVKILCVSPKSQRATKIKQFYKSEECTRMVREEVRKILENCGVTEEAVVKMLLEAREVALEKKDAANMLRAAENFVDMYGMKEKDRQIDTRTFEVESEVEDLKKLEKVSDRLKLTQKEEKDAQTN
Ga0307355_109085	Ga0307355_1090851	F055836	PVRPRVRRGMELSEGGVVTIYKKKWSRQFLGFIAVTMRWPMLLLLSLGRFLKINCIFTVYPGSQRDVDGYFPKGLKWFLKPVASGKPFVAGVITTGNGLGRGLVLAVPNTVDQFKQDRKLVGTIMKNLKLTRTLTGARTIAIAGQGPRFFRSHFPYEQPFVYGLKGRVFSVVETVERVTEKHGLRKEQTTVAILGVGEIGAAIISNLEEKGYRAVGIEIRIADGRVEIGREGMERLKGADLVVVQTPRGDDVVPYYGNLKDTAILIDDSHPRITVRPDDVKFYKVAIGRSGVEFRPPLPGYEKYWIPGCVQESMVVAESGKVDLSQEDFNRRSKELGFFAHLVDDR
Ga0307355_109255	Ga0307355_1092552	F033857	MVEIIDLSTLSPKQVVVKIGNGDEIEEIDLSIVPARATLLLSEATQRHGGWDKIPDDEMVPAIAAICQQSNPKITAEWLETKLTRPQLAGLTQIVIAQAFRPWGNQKKDGKEQD
Ga0307355_109713	Ga0307355_1097132	F101223	MTEVTQEDLETLKSELNEIIETRLDSFIDEFVATWNELENKESESEGCRSCESDNSDTENPARYLIFAGGNKFFATDIKPNAMVGIDFYLHEVDPVTGKEYNSQGTITNADVVVLDLQPEMDLETFSLIKRNTLDYVIKQAQEAQAKEKAMKAENSK
Ga0307355_110928	Ga0307355_1109281	F062800	QTRVFSTVTNRRKGKKGKGSKGKRRTNQLQAVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNVIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVTLASTANATIRVHYHIEWFDLQYAV
Ga0307355_112445	Ga0307355_1124451	F051952	PDHFTSTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRAVLTSLEDVVSANPQERLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHSSSN
Ga0307355_114017	Ga0307355_1140171	F075034	EHAAREVGLPGRADRMIACRSCGAPTAGSDGICRDCADAMRAERSEALSALCRVHRVRYVEDLPVSALEEMQVEWGRR
Ga0307355_114017	Ga0307355_1140173	F004383	LHAGRYPEGAREYAREWVGMTDILERAFMARIRADEYREALAALQREFDERPDVIEIKRLIDRCEEERRTCIEQAKAAGISKQGSFLLKIRTRKQRTVIPDKFFARFGAETFVRCSTVAIGKAEAVVGKGAFDDCCEVEVKEIGVSVEYERSEGSE
Ga0307355_116048	Ga0307355_1160484	F035785	METKKIEAETAAKMSENELMDAVWEATENSVLEIFAADPDNQSGDNDGVYLEVVKLDDEESVVRDRWPNLDGTRHIVSTSDIYAIYRALVDQVEEVA
Ga0307355_117090	Ga0307355_1170902	F067770	MIEFKYNSPVFKLGKISRSEWRELGMSARSEIVKRTRNGVDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGGRYLERIAKLQTEKNKKANK
Ga0307355_118453	Ga0307355_1184532	F071368	MDNLPHPVTTTDVYLARIVQQNDEIIALLNQQRPAPKP
Ga0307355_119245	Ga0307355_1192452	F064746	LIIFLGICAVLVCGCLDTAAEQKSVMIDGYTFTASLNDKWVNSSGDVSKYKPADLEDQFGIPDGAYDWTGFADYSAFDYRSGEPSGSITKAGWAHIFVLKPDEDLADSSSIDILKHAAYMIINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVQGELITSEDYPAFINDNSLGAIAFFLDGGKVCVIDAFTTNNFGMSAWDIIDSITVTP
Ga0307355_121779	Ga0307355_1217791	F103328	MVSLILTVVIAAVTMMVGLVVVANMESSMPDISGSALSTSLTSVMENTGTAFNFLALGLFVLAAVFIIGIVAGVLGGGQ
Ga0307355_122703	Ga0307355_1227031	F048390	TLQHRVTPHGRDFYALSIPPQVAEALNLKAGGSVDIIVTPVKKSKFEVTLKPTPVELSQSLKEV
Ga0307355_124435	Ga0307355_1244351	F036251	MSAKERQTVLFSDTGVTTPIDTTERVSLSDGAVFVAQRIEIRPSNKYGEYVVFDGEDLDGKDFHAYSTSSVVLQQAKALLEKYGGEKGALTHDVLCAVKSVLSVNTGR
Ga0307355_124435	Ga0307355_1244352	F040648	VINHEEALLEIEPMLDTAREGVAALETATTLIHIPTREMAKIQTAITKMREAAVYIENRARNLPVRSNATTKSALKDALKNASQEQIERAYAILSGQEAVEDVPGEGDEE
Ga0307355_125935	Ga0307355_1259351	F054063	KYTSTIMNAWLYGVENTANIFFDKPKLFYRRWGTVAIKPFIESWNDLGMEFQKGLSPYNTAKMFVDALVKAEFLNNTGFEMNGDDNNFTFKAIECPYKSHCTRLVTEGKEIACLRAITLLGAMEFNKEGESLKYLYKFDFNKESPCLVSFEKFKD
Ga0307355_126822	Ga0307355_1268221	F070165	TKSLGKFQNRLLGSLTGFQVPVDPGLSKRTEMVRMRRRGRNARRSTQTLTHTAVFTMGGPASVSASNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPALILTH
Ga0307355_129930	Ga0307355_1299302	F078879	ENMTPDVSDEVKEGYDLLEGIGIVERTESGQYYPTEVGAAIIYAVLCKQMFGTDADDFESEESQQVMMNRLEEMDLVEQGDESFIITIEGFTAFFTNLAYDCPYREEFLDWLALATAELAEEMEKL
Ga0307355_130023	Ga0307355_1300232	F020914	GFAIDQILSENQALPNATSGDSTNTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGLTANAVTTVLPSILIKQGVQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSVRR
Ga0307355_131703	Ga0307355_1317031	F077342	VSTGNYVYEITDAEMAGVDLTDSNVAVLLHCGLANEQERDFIVFSKESIEQVFDINMQYFLLYSPTYCRNAGNGIFIVSIPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTSVVDEPAKEQRREILNPKRIF
Ga0307355_133652	Ga0307355_1336522	F036251	MSAKERQTVLFGDTGVTTPIDTTDRVRLTDGMVFVAQKIEVRPSNAYGEYVVFDGEDLDGKDFHAYSTSSVILQQAKALLEKYGGEKGALTHDVLCAVKSVLSVNTGRRFL
Ga0307355_134422	Ga0307355_1344221	F068879	NRSVYVIGAPWRDNRVTKEEGFVAGATACPGCRRGLPPGVTVFANARIN
Ga0307355_134932	Ga0307355_1349321	F025291	YMVNLNRQINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLITDEFQNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKSLTAQSCEWDLKGLGPNFNVWLDTGATIPGQFQIGNYIFGSIPINLGWEVKFQL
Ga0307355_135513	Ga0307355_1355131	F049070	GTTMPETVRERWRTANRFADVLEAEVKMRRNPLAARVVSWFNLCRVCQDLEEQMLLAPQPGEDDSQLHRALLSTAIASGEGLLLECDDAETLKPLRLTPPALAAKVESLRVTFTQWHTELKPERQAAILKEAFRGTV
Ga0307355_136330	Ga0307355_1363301	F029768	LKMLDSVLREQEKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQREGYSLEQAKANYFLFQTVEYLEFLEQAKVMSNHSLQFMEKATEKMNSILQETESKIEQAIKEIEQEQEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029673: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Trp2 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences