3300029577: Human fecal microbial communities from Shanghai, China - P012V1

Overview

Basic Information

• IMG/M Taxon OID: 3300029577
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283506 | Ga0244883
• Sample Name: Human fecal microbial communities from Shanghai, China - P012V1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 224410430
• Sequencing Scaffolds: 5
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F051936	Metagenome	143	N
F056309	Metagenome	137	N
F056682	Metagenome	137	Y
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F067720	Metagenome	125	Y
F080163	Metagenome	115	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244883_100371	Not Available	84217
Ga0244883_100572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	59442
Ga0244883_100581	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	58888
Ga0244883_105154	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	7038
Ga0244883_123286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1142

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244883_100371	Ga0244883_10037112	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTYIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0244883_100371	Ga0244883_10037114	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFATYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0244883_100371	Ga0244883_10037117	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILEISLKDAYYNYSNTSNIHYEGGKFPSMLTIQLFNLEF
Ga0244883_100371	Ga0244883_10037120	F044555	MKTTNPSSRITISQNGNQILSCKVYKELNYILSMSNEEILELISGLYYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYDNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0244883_100371	Ga0244883_10037124	F080163	MKTIKFLQESFETKERFQQEISFKYFYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESEILDSEIELLQEKLDLIREETCELIGVNPNLEKQGHEDNYVFNLNIDSDNQIGFFLQATEL
Ga0244883_100371	Ga0244883_10037126	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRYAETNLGMCRIFDNQNHEFWHSVIKPWFQPERFGITHLWFTSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRLRVLKLALKDLERIKEEYGKD
Ga0244883_100371	Ga0244883_10037127	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0244883_100572	Ga0244883_10057228	F056682	MKTQSRAGKVANQPIAQGEMYSASFSAFPSKNRSTFSIQELGKIYENQEVL
Ga0244883_100581	Ga0244883_100581105	F067720	MASITYEHPGGFTEMYAAQEQFRHITKMVCARFRDLTKTYHLGNVTVMVRNAGQLPQPFWLGAACGGGSRSLSASVARS
Ga0244883_105154	Ga0244883_1051541	F051936	MKQEGTGQVLFFPLALRGKAFGFSVLQKHAVMTSVISIFFATLIIRYLS
Ga0244883_123286	Ga0244883_1232861	F056309	VKGTKRTCLRRTPSLSVVPLLLGASDSLSVSYGMEPEQEALSIVSFKD