3300029571: Human fecal microbial communities from Shanghai, China - P034V6

Overview

Basic Information

• IMG/M Taxon OID: 3300029571
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283545 | Ga0244922
• Sample Name: Human fecal microbial communities from Shanghai, China - P034V6
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 203561832
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella biformis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia → Erysipelotrichales → Erysipelotrichaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F056309	Metagenome	137	N
F067844	Metagenome	125	N
F070093	Metagenome	123	N
F078004	Metagenome	117	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244922_103289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella biformis	9403
Ga0244922_109685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3143
Ga0244922_110775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2808
Ga0244922_124289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1146
Ga0244922_133554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia → Erysipelotrichales → Erysipelotrichaceae	766

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244922_103289	Ga0244922_1032891	F026592	NLLATNSISCCLRTASPQGIDAQASQGSVAPLTERSDETFSVGQFSSADWE
Ga0244922_107183	Ga0244922_1071831	F078004	IYVPAVSRRIRLHALLSAVSEHLSSRNTDLLFRKSSAGGLSTVAGSAALDIYMIRHALVIAVINTFYRLTVDADRMTWMRQGITERFSSLSLLRKALTAGVVTVTGVLAAHHDVSLAAQTVLIIGTIFHNAF
Ga0244922_109685	Ga0244922_1096851	F056309	VRTTVKGKKRTCLRRTPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFMD
Ga0244922_110775	Ga0244922_1107756	F070093	GVCRVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPNYADSIS
Ga0244922_124289	Ga0244922_1242891	F070093	SNFESLLLAEFCPFRIDPPMEPEQEHLSKLYSGSGIHSLPELNSNFMETNQ
Ga0244922_133554	Ga0244922_1335543	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGG