3300029564: Human fecal microbial communities from Shanghai, China - P033V1

Overview

Basic Information

• IMG/M Taxon OID: 3300029564
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283542 | Ga0244919
• Sample Name: Human fecal microbial communities from Shanghai, China - P033V1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 183093286
• Sequencing Scaffolds: 7
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F051936	Metagenome	143	N
F056309	Metagenome	137	N
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F067845	Metagenome	125	N
F068855	Metagenome	124	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F084124	Metagenome	112	Y
F102167	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244919_100100	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	157974
Ga0244919_100386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	75484
Ga0244919_100628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	54328
Ga0244919_100922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	38067
Ga0244919_102123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12562
Ga0244919_104572	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	4504
Ga0244919_135484	Not Available	625

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244919_100100	Ga0244919_100100133	F078006	MLNQALAGRKEYHDRTCADMVRGRFPAPWHNLNVSSMEDNILKRAAAELKEAGCRVFAWKDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLETALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
Ga0244919_100100	Ga0244919_100100139	F080673	MKLQDEALLYLRDNITKDEAYYILTTENEMTEVLMSKRKDGSKRIKILDAEYTIEKDDMLFLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILNNINREKVLKYPYIAIQLDNIQTVEKRRVVFEITGHRMDDNKERIDFMFVYFMARML
Ga0244919_100100	Ga0244919_100100153	F102167	MDINQIKTYLPSGWDVVDLIDHGIIDLDIMNGKMIGEYVAVLMIKSYDKTNGHILTTFSFHDKDMEKLRMLIGNAIMAVGYRNNPLTGDGNTAIK
Ga0244919_100100	Ga0244919_100100169	F058555	MGDLHRLPIHPNNLFRIDETRIFAAKILQKMMGTKISLLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYRHVIEDCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKDIFVGKKTSVYKCLNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKNLIDIGMQEISKSTIYRYISMFLDMCKKSISDLYEEVVKNNGVVNTKDNNNVTIGHIRASYKGSVLYILISTDYIINVFLGKKSAEMSKAG
Ga0244919_100100	Ga0244919_10010018	F064725	VIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKFI
Ga0244919_100100	Ga0244919_100100189	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTAFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLKIYPGPPDMWNYFDINTLPFFEVDKINPNITDFYFLNDWASGERRTGWNDDNMSGRGLEHLTSFIAANSNSLRMDKLPDYIYEMRAITWFNVNSSTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0244919_100100	Ga0244919_10010028	F077313	MSKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRTKYANAFDQDNVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQDREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNETVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEDDVAEAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINADERLEYYKTFMPLAYDAYMSAPKATAAKALQDAIYNTTGGWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKFGQYSSSRPMIGLDVVTEDQHKALNDAGITHFSQLFSDKNKDIVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMNIGDVEDPDVKLDMPELIDASTLPKTNTNTNTGKSDNNRGGRNIVGGGLDFPEVFRMTPGSVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0244919_100100	Ga0244919_10010031	F050794	MQDLRIQRVKVLMMLYTSHYFVNNRQRQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIKAMMRDLLDELKDDIDLNILIFDVTQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYSYISSI
Ga0244919_100100	Ga0244919_10010078	F076653	MTIRDKYFGWKDIFFSRFVHCDNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFERMGVKMKYNAYYCYAATSGIWYDNGFKRRLAKRFNRSLSGGGELFGANLACMVCDRKDIDWEALRLWLEKYDDPTDNGMVNSPIQFMYLYLYYTFNK
Ga0244919_100386	Ga0244919_10038658	F084124	MFGGLNTTAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYRKILWALPKPAIFEKIE
Ga0244919_100628	Ga0244919_10062841	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAYAPELDNTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADGNMSHTDDLNAFLYWSGCDGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAKLLDDAAGHNEMGAAFIDYNGTAYVVAVFR
Ga0244919_100922	Ga0244919_1009223	F032286	MVKWVCQTVTSVRHRALVFNTWLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISLFSLALIFIFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKRTEI
Ga0244919_102123	Ga0244919_1021237	F068855	VPTVEAQGPQARKTLALQGLQAEKENENANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSKGGAVW
Ga0244919_104572	Ga0244919_1045721	F051936	VLFFPLALRGKAFGFSVLQEHAVMTPVISIFFVVLIIRHLSIHISIKK
Ga0244919_135484	Ga0244919_1354841	F056309	KGTKRTCLRRTPSLSVVPLLLGGSDSLSVSYGMEPEQEAISIVSFKD