3300029556: Human fecal microbial communities from Shanghai, China - P073V1

Overview

Basic Information

• IMG/M Taxon OID: 3300029556
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283598 | Ga0244975
• Sample Name: Human fecal microbial communities from Shanghai, China - P073V1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 175494273
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056309	Metagenome	137	N
F067845	Metagenome	125	N
F070093	Metagenome	123	N
F076189	Metagenome	118	N
F090514	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244975_100240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	117048
Ga0244975_100386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	83877
Ga0244975_100781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	44224
Ga0244975_100986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	34370
Ga0244975_105211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3932

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244975_100240	Ga0244975_10024094	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADIPPRLTGAKWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAVPFLFCG
Ga0244975_100386	Ga0244975_1003863	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELARQLKVAYAPELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMGHTDNLNAFLYWSGCDGVPNDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0244975_100781	Ga0244975_10078115	F056309	MLNAVRNTKRVRSTVKGTKRTCLRRTPSLSVVPLLLGDSGSLSVSYGMEPEQEALSIVSFMD
Ga0244975_100986	Ga0244975_10098621	F076189	VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYRECAELSAYFDLYAIQSAQKQLKMLCNFHENTFRLLIFYTNYAIL
Ga0244975_105211	Ga0244975_1052116	F070093	FESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLSELNPKSTQTLS