3300029530: Human fecal microbial communities from Shanghai, China - P057V6

Overview

Basic Information

• IMG/M Taxon OID: 3300029530
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283585 | Ga0244962
• Sample Name: Human fecal microbial communities from Shanghai, China - P057V6
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 133009621
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	6
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056309	Metagenome	137	N
F067845	Metagenome	125	N
F070093	Metagenome	123	N
F076064	Metagenome	118	N
F078693	Metagenome	116	N
F089054	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244962_100023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	236651
Ga0244962_100112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	127845
Ga0244962_100253	Not Available	85439
Ga0244962_100313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	74939
Ga0244962_100321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	73855
Ga0244962_100651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	42160
Ga0244962_100970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	26641
Ga0244962_102843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6662
Ga0244962_103548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	4939
Ga0244962_123878	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	556

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244962_100023	Ga0244962_100023226	F078693	MVLAPVRGAERFFIKANCSLLMSKENQKSTSDFDALDPRERGCSPLSDPEGEVE
Ga0244962_100112	Ga0244962_100112138	F056309	TKRTCLRRTPSLSVVPLLLGGSDSLNVSYGMEPEQEALSIVSFKD
Ga0244962_100253	Ga0244962_100253107	F089054	MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQQINPWHKHSTYIRLKLRDILQIPLTDITIIDIISLP
Ga0244962_100313	Ga0244962_10031373	F070093	VCRVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLTELNPNFMEANQ
Ga0244962_100321	Ga0244962_10032171	F070093	CRVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLSELNPKLNL
Ga0244962_100651	Ga0244962_1006511	F056309	TKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSTVSFKD
Ga0244962_100970	Ga0244962_1009701	F070093	EFCPFRIDPPMEPEQERLFKLYSGSGIQSLPELNPN
Ga0244962_102843	Ga0244962_1028432	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADGNMGYTDDLNKFLYWSGCYGVPNDVTVALPLDSTAMTAQLYAPQADSAAAKLLDDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0244962_103548	Ga0244962_1035481	F070093	FESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLSELNPYPL
Ga0244962_123878	Ga0244962_1238781	F076064	FRHHISEELKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY