3300029524: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005361-17

Overview

Basic Information

• IMG/M Taxon OID: 3300029524
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283417 | Ga0244794
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005361-17
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 210473706
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F051936	Metagenome	143	N
F078693	Metagenome	116	N
F089053	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244794_100422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	55196
Ga0244794_108600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3620
Ga0244794_113098	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	2421
Ga0244794_114242	Not Available	2242
Ga0244794_135930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	881

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244794_100422	Ga0244794_10042261	F078693	MVLAPVRGAERFFIKANCSLLMSKENQKTTSDFDALDPRERGYSPLSDPEGEVETEKS
Ga0244794_108600	Ga0244794_1086003	F029444	MEVSEQLTGFEPKDLMSRTVSNLQRPFREDFSLQKSGIIAEKESQILGCRFVGFDRPKKAAPFFNF
Ga0244794_113098	Ga0244794_1130986	F051936	LALRGKAFGFSVLQKHAVMTPVIILFFEMLIIRYLSIHISIKK
Ga0244794_114242	Ga0244794_1142423	F078693	MVLALVRGAERSFIQADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEG
Ga0244794_135930	Ga0244794_1359303	F089053	LCRAKRALFQFGSRNGCVVGGCRPVKGCIRKWLYIFANGQLKLSTAEEVNVKNMEAFL