3300029520: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005368-32

Overview

Basic Information

• IMG/M Taxon OID: 3300029520
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283424 | Ga0244801
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005368-32
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 180959139
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044554	Metagenome	154	N
F051936	Metagenome	143	N
F070093	Metagenome	123	N
F084124	Metagenome	112	Y
F088920	Metagenome	109	Y
F089005	Metagenome	109	N
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244801_100183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	86305
Ga0244801_100925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	30627
Ga0244801_101158	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	25174
Ga0244801_102132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	14202
Ga0244801_102726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11091
Ga0244801_108367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3273
Ga0244801_109580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	2836
Ga0244801_136898	Not Available	670

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244801_100183	Ga0244801_10018366	F084124	LNATANAFARATKGNKHHFNSQRNALTMFLAFLFIMAVACFVKLSASTQTAWLFAPDKLLYRKILWALPXXXXXXXFEKIE
Ga0244801_100925	Ga0244801_10092519	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRANFAQALFSSLLFVSDTRAKCILFLLFESEIAHLQGQYRFNSHRYCFSAFLVL
Ga0244801_101158	Ga0244801_1011581	F051936	MKQEGTGQVLFFPLALRGKAFGFSVLQEYAVMTPVISISVTMLIIRRLSIYI
Ga0244801_102132	Ga0244801_10213216	F089005	LTKSKQRSIIALALLRLATSNEGSKQALKVRRTLKIEQRENSKETRNDFEESSKNY
Ga0244801_102726	Ga0244801_1027261	F088920	VSARPHYYPAFGIGVILHLILHFSQKVAIFAPKRAFLLLFVPTLFFAGLSVLSPQTSPKISGQASLYQPWLSPYCLFKDQLEMR
Ga0244801_108367	Ga0244801_1083675	F070093	SNFESLLLAEFCPFRIDPPMEPEQEHLFKLYSGSGIHSLPELNPNCATVISFQ
Ga0244801_109580	Ga0244801_1095803	F099269	MRRPPFVHGVLLSVQVGELLLLDDLGDRASGASVLAGAAGNAGILVSDGSDVVELQNTSGASVNANATSDALVGINYGMSHGSFLSIVRCA
Ga0244801_136898	Ga0244801_1368982	F051936	VLFFLLALRGKAFGFSGLSETAVMTPVIINFSLLLIIR