3300029519: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012175-89

Overview

Basic Information

• IMG/M Taxon OID: 3300029519
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283463 | Ga0244840
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012175-89
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 169205247
• Sequencing Scaffolds: 15
• Novel Protein Genes: 16
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F047126	Metagenome	150	N
F050794	Metagenome	145	N
F056309	Metagenome	137	N
F057001	Metagenome	137	Y
F067845	Metagenome	125	N
F068811	Metagenome	124	N
F070093	Metagenome	123	N
F074899	Metagenome / Metatranscriptome	119	N
F087335	Metagenome	110	N
F088921	Metagenome	109	N
F097172	Metagenome / Metatranscriptome	104	Y
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244840_100166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	97465
Ga0244840_100249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	77908
Ga0244840_100301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	69475
Ga0244840_100346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	63225
Ga0244840_100506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	48153
Ga0244840_100867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	30398
Ga0244840_100875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	30071
Ga0244840_101565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	16915
Ga0244840_101852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	14506
Ga0244840_101899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	14156
Ga0244840_103032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	8622
Ga0244840_104031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	6223
Ga0244840_109120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2524
Ga0244840_109866	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2323
Ga0244840_130361	Not Available	737

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244840_100166	Ga0244840_1001662	F097172	MKKNVLKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYRYHIDGYNKKGYPASYSKASFYKDLNSLPAVKTGKTTINVPAVTSSVKSVSKEKDNPEYESFVKFKALKTGKYVVTLDNLQGTDDKSLKCLNIYICRIAKNGKKYFLEDDLYPDTVGNYGDLYENNYLARLRTILDNYKAEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQTYVFVIDNRGMAKAVPPYFTTHGSNEQSCLWGGNYLKAYSFDMNIEYKK
Ga0244840_100166	Ga0244840_1001663	F097172	MKKNVLKKLMCAVLATACVVTAVVPAMADDVVTAEAATKKVTSAYRYHIDGYDKKGYPASYSKASFYKDLNSLPAVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKPVKEGKKYKLEYLYPDAVGNYGDLYENNYLAKFRTIFDNYKAEHPEYADAIDETYNDESEYVSKHPVNKDKFTTRLKKGQTYVFVIDNRGMAEPCKPYLDEFGSDHQSCLSGGNYLKAYSFDMNIEFRK
Ga0244840_100249	Ga0244840_10024911	F074899	MSGRKQWNKQAATSSFLDKKPLESLILQGLEGSAVVGKDEVGSSNLPSSSKKTLKPQWF
Ga0244840_100301	Ga0244840_1003019	F068811	MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVTVSLILNENVSETLCIFSIDKTNGCRI
Ga0244840_100346	Ga0244840_10034664	F070093	LLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPNFMEANQ
Ga0244840_100506	Ga0244840_1005061	F070093	CRVSNFESLLLAEFCPFRIDPPMEPEQEHLSKLYSGSGIHSLPELNPN
Ga0244840_100867	Ga0244840_10086739	F097172	MKKNVFKKLMCAVLAAACVATAVVPAMADDVVTVEAATRKVTSAYKYHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPCYESYVKFKAPKTGKYVVTLNNLQGTDDKSLKSLSCSLCEIAKTGKKYTLSGFEPDCNTVGKYDTLYENNYLARLRAILDNYKAEHPEYADVIEYDYNDYTDFVNKRPVAKDKFTTKLKKGHTYVFIIDNSLGKTTCKPYFTTHGSDEQSCLYNTNYLAAYSFDMNIEYRK
Ga0244840_100875	Ga0244840_1008751	F056309	SLSVVPLLLGGSDSLSVSYGMEPEQEALSIVYFKD
Ga0244840_101565	Ga0244840_10156521	F097493	MYKFYMKNGQARFYERGVEIDGTVYGIRTDSDILRIKRSVVNSKFAESEEDFDMNVEIAKIQHTDITLEQPTSEQLSQIQSKTFDSMSELKQHVQSVMNGDETMSQDEINAMLMLQIAELKAGVDSE
Ga0244840_101852	Ga0244840_10185216	F029444	MEVSEQLTGFEPEDLMSWTVSNLQRPFREDFSLKKSGIIAEKESQIFGRRFVGFDRPKKAAPFFNF
Ga0244840_101899	Ga0244840_10189910	F088921	LEAAKKIAVKTSALGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVTNKSAMIRDKMWSKS
Ga0244840_103032	Ga0244840_1030328	F047126	LFPKAYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFFSQTAAASQSKSAYILSSLESPCILCSLLRYFNILSKKLQKTC
Ga0244840_104031	Ga0244840_1040316	F087335	MIELYFNDASLLPENREERQYAEAALNNILAGKTADTEMCILPCFYDAPLHKGLLYHLDDGTTLRIRPILNEAGEPELLIRCVTEETVEEMYQRVSNYDFDEPCAGNVPS
Ga0244840_109120	Ga0244840_1091201	F067845	SVNTGTDAEKAAELARQLGVAYAPELDSTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMSHTDDLNAFLYWSGCDGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAKLLDDAAGHNEMGAAFIDYNGTAYVVAVFR
Ga0244840_109866	Ga0244840_1098663	F057001	MTNKELNKVQNEVKKASEKTLTGAVKAWCQLFKSSKEVNEILKDNDIKVDRAIVPALAALAKDKEIVIQLCKEILPRVNNTFCAYKEIEREYYDKNDQDKNKKLKMSEIEDIAILGSSHKRFGYNEPIEYDFGIYYETFNGADKRIIKCAVPIKRYTFNLIAKCVTYYLTHPKNER
Ga0244840_130361	Ga0244840_1303611	F050794	MAPVGTLYIMQLDAFLHRKIMQDLRIQRVKVLMMLYTSNYFVKVRQKQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIEAMMRDLLDELKDDIDLNILIFDVSQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG